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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG30417-RA through 18771 annotations produced 1 hits


Annotation Number : CG30417
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050417
Gbrowse : chr2R:19214272-19215079 (-) // 100.0 //
Probeset : 1640010_at
Accessions : protein= NP_726307;, nucleotide= NM_166592;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0050417.
Homophila reports that CG30417 is a close match (3e-12) to human gene CBP;CREBBP;RSTS (NP_004371), a gene associated with Rubenstein-Taybi syndrome, 180849 (3).
BioGrid reports that CG30417 interacts with CG31111 CG6770 CG9924 .
VDRC has 3 RNAi stocks for FBgn0050417 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.30None
Head1 00 of 4 0.20None
Eye2 10 of 4 0.21None
Thoracicoabdominal ganglion4 30 of 4 0.50None
Salivary gland4 10 of 4 0.40None
Crop1 00 of 4 0.10None
Midgut2 10 of 4 0.20None
Tubule2 00 of 4 0.20Down
Hindgut1 00 of 4 0.20None
Heart1 00 of 4 0.11None
Fat body2 10 of 4 0.21None
Ovary2 00 of 4 0.20None
Testis114 34 of 410.90Up
Male accessory glands1 00 of 4 0.20None
Virgin spermatheca2 10 of 4 0.27None
Mated spermatheca3 00 of 4 0.33None
Adult carcass3 10 of 4 0.30None
Larval CNS2 10 of 4 0.28None
Larval Salivary gland7 30 of 4 0.66None
Larval midgut2 00 of 4 0.25None
Larval tubule1 00 of 4 0.10None
Larval hindgut2 00 of 4 0.21None
Larval fat body21 72 of 4 2.10None
Larval trachea3 20 of 4 0.36None
Larval carcass2 00 of 4 0.25None
S2 cells (growing)2 00 of 4 0.23None
Whole fly10 31 of 4

Looking for CG30417-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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