FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG30426-RA through 18771 annotations produced 2 hits

eggless (egg):

Annotation Number : CG30426
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086908
Gbrowse : chr2R:20663058-20666076 (-) // 100.0 //
Probeset : 1639970_at
Accessions : protein= NP_611966;, nucleotide= NM_138122;
Pathway : epigenetic // inferred from mutant phenotype /// 0044026 // DNA hypermethylation // inferred from mutant phenotype ///
Interpro : epigenetic // inferred from direct assay /// 0048132 // female germ-line stem cell division // inferred from direct ass
FlyMine data for FBgn0086908.
Homophila reports that CG30426 is a close match (4e-19) to human gene EHMT1;EUHMTASE1 (NP_079033), a gene associated with Chromosome 9q subtelomeric deletion syndrome, 610253 (3).
TRiP has 4 RNAi stocks for FBgn0086908 available for purchase.
VDRC has 6 RNAi stocks for FBgn0086908 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	91 ± 1	4 of 4	1.30	None
Head	38 ± 2	4 of 4	0.60	Down
Eye	53 ± 2	4 of 4	0.78	None
Thoracicoabdominal ganglion	78 ± 5	4 of 4	1.10	None
Salivary gland	29 ± 4	0 of 4	0.43	Down
Crop	38 ± 1	4 of 4	0.60	Down
Midgut	35 ± 2	0 of 4	0.50	Down
Tubule	63 ± 1	3 of 4	0.90	Down
Hindgut	34 ± 4	0 of 4	0.50	Down
Heart	29 ± 4	4 of 4	0.42	Down
Fat body	26 ± 2	4 of 4	0.39	Down
Ovary	124 ± 2	4 of 4	1.80	Up
Testis	34 ± 2	4 of 4	0.50	Down
Male accessory glands	24 ± 5	3 of 4	0.40	Down
Virgin spermatheca	28 ± 1	4 of 4	0.42	Down
Mated spermatheca	31 ± 1	4 of 4	0.46	Down
Adult carcass	35 ± 2	4 of 4	0.50	Down
Larval CNS	160 ± 9	4 of 4	2.35	Up
Larval Salivary gland	43 ± 1	4 of 4	0.63	Down
Larval midgut	32 ± 1	0 of 4	0.48	Down
Larval tubule	41 ± 2	0 of 4	0.60	Down
Larval hindgut	41 ± 2	3 of 4	0.61	Down
Larval fat body	38 ± 3	4 of 4	0.60	Down
Larval trachea	77 ± 6	4 of 4	1.14	None
Larval carcass	55 ± 2	4 of 4	0.82	None
S2 cells (growing)	97 ± 1	4 of 4	1.43	Up
Whole fly	68 ± 7	4 of 4

eggless (egg):

Annotation Number : CG30422
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086908
Gbrowse : chr2R:20666388-20667437 (-) // 100.0 //
Probeset : 1636304_at
Accessions : protein= NP_611966;, nucleotide= NM_138122;
Pathway : epigenetic // inferred from mutant phenotype /// 0044026 // DNA hypermethylation // inferred from mutant phenotype ///
Interpro : epigenetic // inferred from direct assay /// 0048132 // female germ-line stem cell division // inferred from direct ass
FlyMine data for FBgn0086908.
BioGrid reports that CG30422 interacts with CG14464 .
TRiP has 4 RNAi stocks for FBgn0086908 available for purchase.
VDRC has 6 RNAi stocks for FBgn0086908 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	21 ± 2	4 of 4	1.10	None
Head	9 ± 2	2 of 4	0.50	Down
Eye	6 ± 1	0 of 4	0.35	Down
Thoracicoabdominal ganglion	13 ± 1	2 of 4	0.70	None
Salivary gland	10 ± 3	0 of 4	0.57	None
Crop	18 ± 2	3 of 4	1.00	None
Midgut	8 ± 2	0 of 4	0.50	Down
Tubule	10 ± 1	0 of 4	0.50	Down
Hindgut	12 ± 0	2 of 4	0.60	None
Heart	4 ± 1	2 of 4	0.23	Down
Fat body	10 ± 2	2 of 4	0.56	Down
Ovary	19 ± 1	4 of 4	1.10	None
Testis	8 ± 0	1 of 4	0.40	Down
Male accessory glands	15 ± 1	2 of 4	0.80	None
Virgin spermatheca	8 ± 2	0 of 4	0.46	Down
Mated spermatheca	10 ± 2	1 of 4	0.55	None
Adult carcass	8 ± 2	1 of 4	0.40	Down
Larval CNS	14 ± 3	4 of 4	0.77	None
Larval Salivary gland	10 ± 2	1 of 4	0.55	None
Larval midgut	3 ± 0	0 of 4	0.18	Down
Larval tubule	15 ± 2	2 of 4	0.80	None
Larval hindgut	6 ± 1	0 of 4	0.33	Down
Larval fat body	18 ± 2	2 of 4	1.00	None
Larval trachea	8 ± 1	2 of 4	0.43	Down
Larval carcass	10 ± 0	2 of 4	0.54	Down
S2 cells (growing)	45 ± 5	4 of 4	2.41	Up
Whole fly	18 ± 2	4 of 4

Looking for CG30426-RA. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720