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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30427-RA through 18771 annotations produced 1 hits



(CG30427):

Annotation Number : CG30427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043792
Gbrowse : chr2R:20819229-20824975 (-) // 100.0 //
Probeset : 1626009_s_at
Accessions : protein= NP_001163298; /// NP_001163299; /// NP_611980; /// NP_726498; /// NP_726499; /// NP_726500;, nucleotide= NM_001169827; /// NM_001169828; /// NM_138136; /// NM_166697; /// NM_166698; /// NM_166699;
Pathway : engulfment // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation"
FlyMine data for FBgn0043792.
VDRC has 1 RNAi stocks for FBgn0043792 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.40Down
Head7 ± 00 of 4 0.70None
Eye5 ± 21 of 4 0.50None
Thoracicoabdominal ganglion8 ± 11 of 4 0.80None
Salivary gland8 ± 10 of 4 0.79None
Crop9 ± 22 of 4 1.00None
Midgut19 ± 30 of 4 1.90None
Tubule6 ± 10 of 4 0.60Down
Hindgut7 ± 12 of 4 0.80None
Heart2 ± 10 of 4 0.23Down
Fat body5 ± 30 of 4 0.49None
Ovary4 ± 10 of 4 0.50Down
Testis3 ± 01 of 4 0.40Down
Male accessory glands5 ± 30 of 4 0.50None
Virgin spermatheca5 ± 10 of 4 0.58None
Mated spermatheca8 ± 10 of 4 0.78None
Adult carcass10 ± 20 of 4 1.10None
Larval CNS4 ± 20 of 4 0.39Down
Larval Salivary gland6 ± 10 of 4 0.63None
Larval midgut13 ± 10 of 4 1.35None
Larval tubule7 ± 10 of 4 0.80None
Larval hindgut7 ± 00 of 4 0.69None
Larval fat body12 ± 10 of 4 1.20None
Larval trachea5 ± 21 of 4 0.57None
Larval carcass5 ± 20 of 4 0.50None
S2 cells (growing)8 ± 21 of 4 0.83None
Whole fly10 ± 10 of 4

Looking for CG30427-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime