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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30448-RA through 18771 annotations produced 1 hits



Odorant-binding protein 56i (Obp56i):

Annotation Number : CG30448
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043532
Gbrowse : chr2R:15755620-15756101 (+) // 100.0 //
Probeset : 1625363_at
Accessions : protein= NP_725929;, nucleotide= NM_166376;
Interpro : 0005549 // odorant binding // not recorded /// 0005549 // odorant binding // inferred from sequence or structural simila
FlyMine data for FBgn0043532.
VDRC has 2 RNAi stocks for FBgn0043532 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.20Down
Head2 ± 00 of 4 0.10Down
Eye2 ± 10 of 4 0.13Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.10Down
Salivary gland4 ± 10 of 4 0.22Down
Crop0 ± 00 of 4 0.00Down
Midgut2 ± 00 of 4 0.10Down
Tubule4 ± 00 of 4 0.20Down
Hindgut3 ± 00 of 4 0.20Down
Heart2 ± 10 of 4 0.11Down
Fat body6 ± 10 of 4 0.30Down
Ovary1 ± 00 of 4 0.10Down
Testis59 ± 44 of 4 2.90Up
Male accessory glands2036 ± 414 of 4100.30Up
Virgin spermatheca3 ± 10 of 4 0.18Down
Mated spermatheca4 ± 10 of 4 0.22Down
Adult carcass4 ± 10 of 4 0.20Down
Larval CNS2 ± 10 of 4 0.13Down
Larval Salivary gland3 ± 00 of 4 0.19Down
Larval midgut3 ± 10 of 4 0.16Down
Larval tubule5 ± 00 of 4 0.30Down
Larval hindgut2 ± 00 of 4 0.14Down
Larval fat body10 ± 22 of 4 0.50Down
Larval trachea3 ± 20 of 4 0.19Down
Larval carcass1 ± 00 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.04Down
Whole fly20 ± 24 of 4

Looking for CG30448-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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