Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3045-RA through 18771 annotations produced 1 hits



(CG3045):

Annotation Number : CG3045
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034703
Gbrowse : chr2R:18060309-18062243 (-) // 100.0 //
Probeset : 1635805_at
Accessions : protein= NP_611646;, nucleotide= NM_137802;
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0004730 // pseudouridylate synthase activity // inferr
FlyMine data for FBgn0034703.
BDGP gene expression has embryonic in situ data for CG3045: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0034703 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 14 of 4 0.30Down
Head15 14 of 4 0.30Down
Eye12 04 of 4 0.21Down
Thoracicoabdominal ganglion16 13 of 4 0.30Down
Salivary gland15 30 of 4 0.27Down
Crop24 13 of 4 0.40Down
Midgut15 11 of 4 0.30Down
Tubule17 12 of 4 0.30Down
Hindgut14 03 of 4 0.20Down
Heart15 14 of 4 0.26Down
Fat body20 34 of 4 0.34Down
Ovary136 34 of 4 2.30Up
Testis21 14 of 4 0.40Down
Male accessory glands20 21 of 4 0.40Down
Virgin spermatheca6 10 of 4 0.11Down
Mated spermatheca10 12 of 4 0.18Down
Adult carcass14 30 of 4 0.20Down
Larval CNS54 44 of 4 0.92None
Larval Salivary gland32 24 of 4 0.56Down
Larval midgut7 10 of 4 0.12Down
Larval tubule30 44 of 4 0.50Down
Larval hindgut17 33 of 4 0.29Down
Larval fat body15 41 of 4 0.30Down
Larval trachea44 14 of 4 0.75Down
Larval carcass24 34 of 4 0.42Down
S2 cells (growing)69 34 of 4 1.18None
Whole fly58 34 of 4

Looking for CG3045-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime