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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30450-RA through 18771 annotations produced 1 hits



Odorant-binding protein 56f (Obp56f):

Annotation Number : CG30450
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043533
Gbrowse : chr2R:15600923-15601355 (+) // 100.0 //
Probeset : 1629161_at
Accessions : protein= NP_725926;, nucleotide= NM_166375;
Interpro : 0005549 // odorant binding // not recorded /// 0005549 // odorant binding // inferred from sequence or structural simila
FlyMine data for FBgn0043533.
VDRC has 2 RNAi stocks for FBgn0043533 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 01 of 4 0.00Down
Head14 ± 14 of 4 0.20Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.05Down
Crop3 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart1 ± 10 of 4 0.02Down
Fat body1 ± 10 of 4 0.02Down
Ovary1 ± 00 of 4 0.00Down
Testis8 ± 33 of 4 0.10Down
Male accessory glands5503 ± 2204 of 469.90Up
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca2 ± 00 of 4 0.03Down
Adult carcass6 ± 31 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland4 ± 11 of 4 0.05Down
Larval midgut2 ± 01 of 4 0.03Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea0 ± 00 of 4 0.01Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly78 ± 124 of 4

Looking for CG30450-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime