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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3047-RA through 18771 annotations produced 1 hits



Salivary gland secretion 1 (Sgs1):

Annotation Number : CG3047
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003372
Gbrowse : chr2L:4937408-4941424 (+) // 99.31 // /// chr2L:4938585-4940981 (+) // 54.7 // /// chr2L:4938881-4940979 (+) // 51.57 // /// chr2L:4939021-4940979 (+) // 50.19 // /// chr2L:4939169-4940979 (+) // 46.5 // /// chr2L:4939213-4940931 (+) // 44.06 // /// chr2L:4939311-4940979 (+) // 42.62 // /// chr2L:4939357-4940979 (+) // 41.43 // /// chr2L:4939405-4940979 (+) // 40.15 // /// chr2L:4939454-4940931 (+) // 37.63 //
Probeset : 1638419_at
Accessions : protein= NP_523475;, nucleotide= NM_078751;
Pathway : 0005576 // extracellular region // traceable author statement
Interpro : 0005198 // structural molecule activity // traceable author statement
FlyMine data for FBgn0003372.
TRiP has 1 RNAi stocks for FBgn0003372 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003372 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 2.80None
Head1 00 of 4 1.70None
Eye3 10 of 4 3.85None
Thoracicoabdominal ganglion1 00 of 4 1.10None
Salivary gland3 20 of 4 4.53None
Crop1 00 of 4 2.00Up
Midgut1 00 of 4 1.80None
Tubule0 00 of 4 1.10None
Hindgut1 00 of 4 1.60None
Heart1 10 of 4 2.24None
Fat body6 60 of 4 7.62None
Ovary1 00 of 4 1.40None
Testis1 00 of 4 2.00None
Male accessory glands1 00 of 4 1.80Up
Virgin spermatheca2 00 of 4 2.50None
Mated spermatheca0 00 of 4 0.94None
Adult carcass4 20 of 4 4.80None
Larval CNS0 00 of 4 0.88None
Larval Salivary gland7521 3674 of 48849.29Up
Larval midgut4 10 of 4 5.56None
Larval tubule0 00 of 4 0.90None
Larval hindgut2 10 of 4 2.41None
Larval fat body40 133 of 448.10None
Larval trachea2 20 of 4 3.12None
Larval carcass1 00 of 4 1.32None
S2 cells (growing)0 00 of 4 1.03None
Whole fly0 00 of 4

Looking for CG3047-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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