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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30474-RA through 18771 annotations produced 1 hits



():

Annotation Number : CG30474
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2R:10882105-10882707 (-) // 100.0 //
Probeset : 1625259_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 0.70None
Head3 ± 00 of 4 0.50None
Eye1 ± 00 of 4 0.17Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.50None
Salivary gland18 ± 33 of 4 2.93Up
Crop8 ± 22 of 4 1.30None
Midgut6 ± 10 of 4 1.10None
Tubule12 ± 02 of 4 2.00Up
Hindgut5 ± 01 of 4 0.90None
Heart3 ± 10 of 4 0.50None
Fat body13 ± 93 of 4 2.08None
Ovary0 ± 00 of 4 0.10Down
Testis23 ± 14 of 4 3.80Up
Male accessory glands7 ± 10 of 4 1.10None
Virgin spermatheca20 ± 14 of 4 3.22Up
Mated spermatheca24 ± 73 of 4 3.96None
Adult carcass2 ± 10 of 4 0.40None
Larval CNS8 ± 43 of 4 1.30None
Larval Salivary gland6 ± 11 of 4 1.07None
Larval midgut5 ± 10 of 4 0.84None
Larval tubule7 ± 01 of 4 1.20None
Larval hindgut4 ± 00 of 4 0.66None
Larval fat body7 ± 30 of 4 1.10None
Larval trachea2 ± 10 of 4 0.36Down
Larval carcass2 ± 11 of 4 0.48None
S2 cells (growing)3 ± 12 of 4 0.54None
Whole fly6 ± 11 of 4

Looking for CG30474-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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