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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3048-RA through 18771 annotations produced 1 hits



TNF Receptor Associated Factor 1 (Traf4):

Annotation Number : CG3048
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026319
Gbrowse : chr2L:4371989-4380725 (+) // 100.0 //
Probeset : 1627704_a_at
Accessions : protein= NP_001097080; /// NP_477416; /// NP_477417;, nucleotide= NM_001103610; /// NM_058068; /// NM_058069;
Pathway : engulfment // inferred from mutant phenotype /// 0006952 // defense response // non-traceable author statement /// 0007
Interpro : thorax closure // inferred from genetic interaction /// 0048102 // autophagic cell death // inferred from expression pa
FlyMine data for FBgn0026319.
BDGP gene expression has embryonic in situ data for Traf1: 51 pix of staining in 24 body parts.
BioGrid reports that CG3048 interacts with CG6099 CG9541 CG5410 CG8446 CG3938 .
VDRC has 3 RNAi stocks for FBgn0026319 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 14 of 4 0.40Down
Head40 24 of 4 1.20None
Eye63 34 of 4 1.79Up
Thoracicoabdominal ganglion13 03 of 4 0.40Down
Salivary gland17 20 of 4 0.50Down
Crop19 04 of 4 0.60Down
Midgut37 14 of 4 1.10None
Tubule22 14 of 4 0.60Down
Hindgut73 24 of 4 2.10Up
Heart312 154 of 4 8.83Up
Fat body21 73 of 4 0.61Down
Ovary15 04 of 4 0.40Down
Testis5 11 of 4 0.20Down
Male accessory glands10 10 of 4 0.30Down
Virgin spermatheca12 22 of 4 0.35Down
Mated spermatheca12 23 of 4 0.36Down
Adult carcass55 44 of 4 1.60Up
Larval CNS238 414 of 4 6.76Up
Larval Salivary gland29 44 of 4 0.82None
Larval midgut17 20 of 4 0.48Down
Larval tubule38 34 of 4 1.10None
Larval hindgut93 84 of 4 2.64Up
Larval fat body16 43 of 4 0.50Down
Larval trachea91 144 of 4 2.59Up
Larval carcass37 14 of 4 1.06None
S2 cells (growing)337 124 of 4 9.55Up
Whole fly35 24 of 4

Looking for CG3048-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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