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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30480-RA through 18771 annotations produced 1 hits



(CG30480):

Annotation Number : CG30480
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050480
Gbrowse : chr2R:10562675-10565638 (-) // 100.0 //
Probeset : 1635845_at
Accessions : protein= NP_725409;, nucleotide= NM_166064;
FlyMine data for FBgn0050480.
BioGrid reports that CG30480 interacts with CG5502 CG5887 .
VDRC has 3 RNAi stocks for FBgn0050480 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 24 of 4 2.80Up
Head1 00 of 4 0.10Down
Eye6 10 of 4 0.46Down
Thoracicoabdominal ganglion21 34 of 4 1.50None
Salivary gland19 20 of 4 1.34None
Crop7 20 of 4 0.50None
Midgut151 64 of 410.50Up
Tubule2 00 of 4 0.20Down
Hindgut3 00 of 4 0.20Down
Heart1 00 of 4 0.11Down
Fat body4 30 of 4 0.30Down
Ovary1 00 of 4 0.10Down
Testis1 00 of 4 0.10Down
Male accessory glands6 30 of 4 0.40None
Virgin spermatheca5 10 of 4 0.40Down
Mated spermatheca6 10 of 4 0.47Down
Adult carcass4 10 of 4 0.30Down
Larval CNS21 24 of 4 1.46Up
Larval Salivary gland4 20 of 4 0.32Down
Larval midgut716 604 of 449.73Up
Larval tubule5 10 of 4 0.40Down
Larval hindgut2 00 of 4 0.19Down
Larval fat body1 00 of 4 0.10Down
Larval trachea3 10 of 4 0.21Down
Larval carcass2 00 of 4 0.16Down
S2 cells (growing)1 00 of 4 0.07Down
Whole fly14 22 of 4

Looking for CG30480-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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