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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30487-RA through 18771 annotations produced 1 hits



(CG30487):

Annotation Number : CG30487
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050487
Gbrowse : chr2R:8825170-8825848 (-) // 100.0 //
Probeset : 1631740_at
Accessions : protein= NP_725245;, nucleotide= NM_165964;
FlyMine data for FBgn0050487.
VDRC has 3 RNAi stocks for FBgn0050487 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland10 ± 20 of 4 0.09Down
Crop3 ± 20 of 4 0.00Down
Midgut4 ± 21 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart3 ± 10 of 4 0.03Down
Fat body7 ± 20 of 4 0.07Down
Ovary1 ± 00 of 4 0.00Down
Testis1362 ± 444 of 412.60Up
Male accessory glands4 ± 30 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.03Down
Mated spermatheca5 ± 21 of 4 0.05Down
Adult carcass7 ± 20 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.03Down
Larval Salivary gland2 ± 10 of 4 0.02Down
Larval midgut7 ± 12 of 4 0.07Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.04Down
Larval fat body143 ± 763 of 4 1.30None
Larval trachea9 ± 131 of 4 0.08Down
Larval carcass3 ± 10 of 4 0.03Down
S2 cells (growing)3 ± 10 of 4 0.03Down
Whole fly108 ± 114 of 4

Looking for CG30487-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime