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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30490-RA through 18771 annotations produced 1 hits



(CG30490):

Annotation Number : CG30490
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050490
Gbrowse : chr2R:7003819-7007201 (-) // 100.0 //
Probeset : 1633316_at
Accessions : protein= NP_724992;, nucleotide= NM_165809;
FlyMine data for FBgn0050490.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.60None
Head3 ± 10 of 4 3.60None
Eye3 ± 10 of 4 3.08None
Thoracicoabdominal ganglion2 ± 10 of 4 2.60None
Salivary gland6 ± 30 of 4 6.90None
Crop4 ± 10 of 4 4.80Up
Midgut5 ± 10 of 4 5.20None
Tubule2 ± 00 of 4 2.40Up
Hindgut4 ± 20 of 4 4.40None
Heart1 ± 00 of 4 1.55None
Fat body4 ± 20 of 4 3.98None
Ovary2 ± 00 of 4 2.20None
Testis1 ± 00 of 4 1.40None
Male accessory glands12 ± 31 of 412.00None
Virgin spermatheca4 ± 00 of 4 4.65Up
Mated spermatheca3 ± 10 of 4 3.35None
Adult carcass2 ± 10 of 4 2.40None
Larval CNS0 ± 00 of 4 0.50None
Larval Salivary gland8 ± 11 of 4 8.30Up
Larval midgut3 ± 10 of 4 3.80None
Larval tubule2 ± 10 of 4 2.30None
Larval hindgut1 ± 00 of 4 1.30None
Larval fat body6 ± 10 of 4 6.70Up
Larval trachea3 ± 30 of 4 3.05None
Larval carcass3 ± 10 of 4 3.27None
S2 cells (growing)3 ± 10 of 4 3.10None
Whole fly1 ± 00 of 4

Looking for CG30490-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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