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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30495-RA through 18771 annotations produced 1 hits



(CG30495):

Annotation Number : CG30495
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050495
Gbrowse : chr2R:3544916-3545941 (+) // 100.0 //
Probeset : 1634267_at
Accessions : protein= NP_724589;, nucleotide= NM_165548;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0050495.
Homophila reports that CG30495 is a close match (1e-45) to human gene FOR;WWOX (NP_057457), a gene associated with Esophageal squamous cell carcinoma, 133239 (3).
VDRC has 2 RNAi stocks for FBgn0050495 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 23 of 4 1.60Up
Head17 ± 24 of 4 1.50None
Eye5 ± 00 of 4 0.44Down
Thoracicoabdominal ganglion16 ± 10 of 4 1.40Up
Salivary gland23 ± 80 of 4 1.97None
Crop219 ± 144 of 418.10Up
Midgut91 ± 34 of 4 7.60Up
Tubule8 ± 31 of 4 0.70None
Hindgut76 ± 34 of 4 6.30Up
Heart1 ± 00 of 4 0.14Down
Fat body7 ± 60 of 4 0.59None
Ovary0 ± 00 of 4 0.10Down
Testis14 ± 03 of 4 1.20Up
Male accessory glands2 ± 00 of 4 0.20Down
Virgin spermatheca6 ± 10 of 4 0.53Down
Mated spermatheca5 ± 10 of 4 0.46Down
Adult carcass17 ± 50 of 4 1.40None
Larval CNS10 ± 20 of 4 0.87None
Larval Salivary gland17 ± 22 of 4 1.43None
Larval midgut74 ± 34 of 4 6.11Up
Larval tubule4 ± 20 of 4 0.40Down
Larval hindgut5 ± 10 of 4 0.47Down
Larval fat body5 ± 20 of 4 0.50Down
Larval trachea4 ± 40 of 4 0.41Down
Larval carcass5 ± 20 of 4 0.44None
S2 cells (growing)6 ± 10 of 4 0.56Down
Whole fly12 ± 01 of 4

Looking for CG30495-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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