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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30497-RA through 18771 annotations produced 1 hits



(CG30497):

Annotation Number : CG30497
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050497
Gbrowse : chr2R:3625254-3670119 (-) // 100.0 //
Probeset : 1629696_a_at
Accessions : protein= NP_610321; /// NP_724600; /// NP_724601;, nucleotide= NM_136477; /// NM_165555; /// NM_165556;
FlyMine data for FBgn0050497.
BDGP gene expression has embryonic in situ data for CG30497: 26 pix of staining in 18 body parts.
BioGrid reports that CG30497 interacts with CG3532 CG3187 CG32086 CG3668 CG3731 CG3938 CG4258 CG4867 CG7047 CG7254 CG7626 CG7808 CG7952 CG8580 CG9324 CG3978 .
TRiP has 1 RNAi stocks for FBgn0050497 available for purchase.
VDRC has 1 RNAi stocks for FBgn0050497 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain542 304 of 4 1.80Up
Head626 694 of 4 2.10Up
Eye718 734 of 4 2.40Up
Thoracicoabdominal ganglion469 224 of 4 1.60Up
Salivary gland1293 1984 of 4 4.33Up
Crop397 214 of 4 1.30Up
Midgut503 294 of 4 1.70Up
Tubule250 124 of 4 0.80Down
Hindgut292 114 of 4 1.00None
Heart722 624 of 4 2.42Up
Fat body1423 2914 of 4 4.76Up
Ovary349 94 of 4 1.20Up
Testis73 74 of 4 0.20Down
Male accessory glands197 74 of 4 0.70Down
Virgin spermatheca707 464 of 4 2.37Up
Mated spermatheca695 294 of 4 2.33Up
Adult carcass537 834 of 4 1.80None
Larval CNS261 404 of 4 0.87None
Larval Salivary gland2028 1144 of 4 6.79Up
Larval midgut800 364 of 4 2.68Up
Larval tubule228 44 of 4 0.80Down
Larval hindgut485 294 of 4 1.62Up
Larval fat body759 744 of 4 2.50Up
Larval trachea519 624 of 4 1.74Up
Larval carcass1096 1174 of 4 3.67Up
S2 cells (growing)488 274 of 4 1.63Up
Whole fly298 74 of 4

Looking for CG30497-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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