Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30499-RA through 18771 annotations produced 1 hits



(CG30499):

Annotation Number : CG30499
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050499
Gbrowse : chr2R:3451936-3453254 (-) // 100.0 //
Probeset : 1638942_at
Accessions : protein= NP_610298;, nucleotide= NM_136454;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004750 // ribulose-phosphate 3-epimerase activ
FlyMine data for FBgn0050499.
BDGP gene expression has embryonic in situ data for CG30499: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0050499 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 ± 14 of 4 0.10Down
Head155 ± 214 of 4 0.50Down
Eye232 ± 104 of 4 0.71Down
Thoracicoabdominal ganglion52 ± 54 of 4 0.20Down
Salivary gland91 ± 54 of 4 0.28Down
Crop254 ± 114 of 4 0.80Down
Midgut139 ± 104 of 4 0.40Down
Tubule178 ± 64 of 4 0.50Down
Hindgut172 ± 84 of 4 0.50Down
Heart530 ± 234 of 4 1.62Up
Fat body377 ± 304 of 4 1.15None
Ovary450 ± 44 of 4 1.40Up
Testis583 ± 364 of 4 1.80Up
Male accessory glands104 ± 64 of 4 0.30Down
Virgin spermatheca199 ± 164 of 4 0.61Down
Mated spermatheca187 ± 24 of 4 0.57Down
Adult carcass428 ± 334 of 4 1.30Up
Larval CNS129 ± 144 of 4 0.40Down
Larval Salivary gland195 ± 34 of 4 0.60Down
Larval midgut50 ± 23 of 4 0.16Down
Larval tubule91 ± 54 of 4 0.30Down
Larval hindgut72 ± 44 of 4 0.22Down
Larval fat body107 ± 74 of 4 0.30Down
Larval trachea383 ± 164 of 4 1.17Up
Larval carcass109 ± 44 of 4 0.34Down
S2 cells (growing)317 ± 44 of 4 0.97None
Whole fly326 ± 154 of 4

Looking for CG30499-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime