FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3052-RA through 18771 annotations produced 1 hits

Helix loop helix protein 4C (HLH4C):

Annotation Number : CG3052
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011277
Gbrowse : chrX:4539159-4541447 (-) // 100.0 //
Probeset : 1628371_at
Accessions : protein= NP_476989;, nucleotide= NM_057641;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0011277.
BioGrid reports that CG3052 interacts with CG31036 CG31090 CG31170 CG32031 CG32086 CG32100 CG32171 CG33484 CG32428 CG32772 CG3338 CG3735 CG4005 CG4568 CG4865 CG4896 CG4998 CG5050 CG5057 CG5242 CG5709 CG5717 CG5783 CG5907 CG6163 CG6315 CG6353 CG6416 CG6972 CG7231 CG7264 CG7347 CG7856 CG8120 CG8145 CG8245 CG8292 CG8361 CG8414 CG8697 CG8745 CG8965 CG9015 CG9160 CG9173 CG9331 CG9556 CG9784 CG9875 CG32581 CG8974 CG31094 Dmel CG17162 .
TRiP has 1 RNAi stocks for FBgn0011277 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011277 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	22 ± 1	4 of 4	3.80	Up
Head	7 ± 1	1 of 4	1.20	None
Eye	4 ± 0	0 of 4	0.76	None
Thoracicoabdominal ganglion	59 ± 2	4 of 4	10.20	Up
Salivary gland	7 ± 2	0 of 4	1.19	None
Crop	5 ± 1	0 of 4	0.90	None
Midgut	7 ± 0	1 of 4	1.20	None
Tubule	6 ± 0	0 of 4	1.20	None
Hindgut	4 ± 1	0 of 4	0.80	None
Heart	3 ± 1	0 of 4	0.68	None
Fat body	17 ± 4	4 of 4	3.00	Up
Ovary	2 ± 0	0 of 4	0.40	None
Testis	2 ± 1	1 of 4	0.40	None
Male accessory glands	5 ± 1	0 of 4	1.00	None
Virgin spermatheca	8 ± 0	0 of 4	1.50	None
Mated spermatheca	8 ± 1	1 of 4	1.45	None
Adult carcass	5 ± 2	0 of 4	0.90	None
Larval CNS	73 ± 9	4 of 4	12.60	Up
Larval Salivary gland	5 ± 2	0 of 4	1.00	None
Larval midgut	6 ± 1	1 of 4	1.15	None
Larval tubule	5 ± 1	0 of 4	1.00	None
Larval hindgut	4 ± 1	2 of 4	0.75	None
Larval fat body	3 ± 1	0 of 4	0.60	None
Larval trachea	4 ± 1	2 of 4	0.70	None
Larval carcass	3 ± 1	0 of 4	0.68	None
S2 cells (growing)	2 ± 0	0 of 4	0.37	None
Whole fly	5 ± 1	0 of 4

Looking for CG3052-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720