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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3054-RA through 18771 annotations produced 1 hits



lethal (2) k05819 (l(2)k05819):

Annotation Number : CG3054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022153
Gbrowse : chr2L:4394197-4400105 (+) // 99.92 //
Probeset : 1641556_a_at
Accessions : protein= NP_608829; /// NP_722974;, nucleotide= NM_134985; /// NM_164582;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0015662 // ATPase activity
FlyMine data for FBgn0022153.
BDGP gene expression has embryonic in situ data for l(2)k05819: 13 pix of staining in 3 body parts.
BioGrid reports that CG3054 interacts with CG9099 .
VDRC has 3 RNAi stocks for FBgn0022153 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain129 54 of 4 1.50Up
Head61 44 of 4 0.70Down
Eye65 14 of 4 0.76Down
Thoracicoabdominal ganglion100 34 of 4 1.20Up
Salivary gland132 104 of 4 1.52Up
Crop85 34 of 4 1.00None
Midgut108 44 of 4 1.20Up
Tubule156 34 of 4 1.80Up
Hindgut73 34 of 4 0.80None
Heart64 24 of 4 0.75Down
Fat body82 84 of 4 0.95None
Ovary164 24 of 4 1.90Up
Testis62 24 of 4 0.70Down
Male accessory glands97 24 of 4 1.10None
Virgin spermatheca111 94 of 4 1.28None
Mated spermatheca109 74 of 4 1.26Up
Adult carcass75 54 of 4 0.90None
Larval CNS113 74 of 4 1.30Up
Larval Salivary gland141 34 of 4 1.63Up
Larval midgut268 114 of 4 3.09Up
Larval tubule225 34 of 4 2.60Up
Larval hindgut139 54 of 4 1.61Up
Larval fat body82 54 of 4 0.90None
Larval trachea95 164 of 4 1.10None
Larval carcass112 44 of 4 1.29Up
S2 cells (growing)339 64 of 4 3.91Up
Whole fly86 44 of 4

Looking for CG3054-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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