FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3068-RA through 18771 annotations produced 1 hits

Aurora A (aur):

Annotation Number : CG3068
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000147
Gbrowse : chr3R:7788851-7790550 (+) // 100.0 //
Probeset : 1627325_at
Accessions : protein= NP_476749;, nucleotide= NM_057401;
Pathway : 0005813 // centrosome // non-traceable author statement
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0000147.
Homophila reports that CG3068 is a close match (9e-11) to human gene SRK;STD;ZAP70 (NP_001070), a gene associated with Selective T-cell defect (3).
BioGrid reports that CG3068 interacts with CG6502 .
TRiP has 5 RNAi stocks for FBgn0000147 available for purchase.
VDRC has 1 RNAi stocks for FBgn0000147 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	13 ± 1	4 of 4	0.10	Down
Head	10 ± 1	3 of 4	0.10	Down
Eye	20 ± 1	4 of 4	0.15	Down
Thoracicoabdominal ganglion	17 ± 1	4 of 4	0.10	Down
Salivary gland	4 ± 0	0 of 4	0.03	Down
Crop	9 ± 0	0 of 4	0.10	Down
Midgut	5 ± 1	0 of 4	0.00	Down
Tubule	4 ± 1	0 of 4	0.00	Down
Hindgut	5 ± 1	0 of 4	0.00	Down
Heart	2 ± 0	0 of 4	0.02	Down
Fat body	5 ± 3	0 of 4	0.04	Down
Ovary	316 ± 7	4 of 4	2.40	Up
Testis	231 ± 16	4 of 4	1.70	Up
Male accessory glands	12 ± 1	0 of 4	0.10	Down
Virgin spermatheca	5 ± 2	0 of 4	0.04	Down
Mated spermatheca	3 ± 1	0 of 4	0.03	Down
Adult carcass	13 ± 5	1 of 4	0.10	Down
Larval CNS	92 ± 8	4 of 4	0.69	Down
Larval Salivary gland	7 ± 2	0 of 4	0.06	Down
Larval midgut	3 ± 1	0 of 4	0.03	Down
Larval tubule	3 ± 1	0 of 4	0.00	Down
Larval hindgut	8 ± 1	1 of 4	0.07	Down
Larval fat body	37 ± 16	2 of 4	0.30	Down
Larval trachea	28 ± 3	4 of 4	0.22	Down
Larval carcass	13 ± 2	3 of 4	0.10	Down
S2 cells (growing)	107 ± 2	4 of 4	0.81	Down
Whole fly	133 ± 6	4 of 4

Looking for CG3068-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720