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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3074-RB through 18771 annotations produced 1 hits



dead man walking (CG3074):

Annotation Number : CG3074
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034709
Gbrowse : chr2R:18077325-18090178 (-) // 100.0 //
Probeset : 1641413_s_at
Accessions : protein= NP_611652; /// NP_726176;, nucleotide= NM_137808; /// NM_166519;
Pathway : 0042600 // chorion // inferred from direct assay
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from sequence or structural similarity /// 0004197 // cystei
FlyMine data for FBgn0034709.
BDGP gene expression has embryonic in situ data for CG3074: 27 pix of staining in 9 body parts.
Homophila reports that CG3074 is a close match (5e-21) to human gene CTSK (NP_000387), a gene associated with Pycnodysostosis, 265800 (3).
BioGrid reports that CG3074 interacts with CG33484 .
TRiP has 1 RNAi stocks for FBgn0034709 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034709 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 31 of 4 0.10Down
Head188 ± 104 of 4 1.00None
Eye459 ± 404 of 4 2.34Up
Thoracicoabdominal ganglion5 ± 00 of 4 0.00Down
Salivary gland57 ± 194 of 4 0.29Down
Crop1234 ± 344 of 4 6.30Up
Midgut507 ± 324 of 4 2.60Up
Tubule272 ± 974 of 4 1.40None
Hindgut320 ± 104 of 4 1.60Up
Heart427 ± 1004 of 4 2.18None
Fat body40 ± 164 of 4 0.21Down
Ovary105 ± 114 of 4 0.50Down
Testis133 ± 44 of 4 0.70Down
Male accessory glands758 ± 374 of 4 3.90Up
Virgin spermatheca33 ± 54 of 4 0.17Down
Mated spermatheca83 ± 124 of 4 0.43Down
Adult carcass156 ± 144 of 4 0.80None
Larval CNS734 ± 724 of 4 3.75Up
Larval Salivary gland53 ± 24 of 4 0.28Down
Larval midgut1433 ± 954 of 4 7.32Up
Larval tubule697 ± 114 of 4 3.60Up
Larval hindgut1168 ± 1164 of 4 5.96Up
Larval fat body49 ± 94 of 4 0.30Down
Larval trachea748 ± 1434 of 4 3.82Up
Larval carcass811 ± 614 of 4 4.14Up
S2 cells (growing)2317 ± 1114 of 411.83Up
Whole fly195 ± 144 of 4

Looking for CG3074-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime