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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3075-RA through 18771 annotations produced 1 hits



NF-YC-like (Nf-YC):

Annotation Number : CG3075
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029905
Gbrowse : chrX:6712207-6714948 (-) // 100.0 //
Probeset : 1634101_at
Accessions : protein= NP_572354;, nucleotide= NM_132126;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0029905.
BDGP gene expression has embryonic in situ data for CG3075: 6 pix of staining in 2 body parts.
BioGrid reports that CG3075 interacts with CG31550 CG32514 CG3891 CG3114 CG32043 CG3510 CG4027 CG4257 CG7570 CG8947 .
VDRC has 1 RNAi stocks for FBgn0029905 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 44 of 4 0.90None
Head46 14 of 4 0.50Down
Eye95 24 of 4 1.02None
Thoracicoabdominal ganglion60 24 of 4 0.60Down
Salivary gland106 104 of 4 1.14None
Crop70 04 of 4 0.80Down
Midgut46 14 of 4 0.50Down
Tubule46 14 of 4 0.50Down
Hindgut50 64 of 4 0.50Down
Heart82 24 of 4 0.88None
Fat body63 94 of 4 0.67Down
Ovary291 54 of 4 3.10Up
Testis30 03 of 4 0.30Down
Male accessory glands65 74 of 4 0.70Down
Virgin spermatheca69 64 of 4 0.74Down
Mated spermatheca79 104 of 4 0.85None
Adult carcass56 44 of 4 0.60Down
Larval CNS145 124 of 4 1.55Up
Larval Salivary gland75 44 of 4 0.80None
Larval midgut63 54 of 4 0.67Down
Larval tubule46 44 of 4 0.50Down
Larval hindgut49 14 of 4 0.53Down
Larval fat body34 44 of 4 0.40Down
Larval trachea118 124 of 4 1.26Up
Larval carcass55 54 of 4 0.59Down
S2 cells (growing)81 34 of 4 0.87None
Whole fly93 64 of 4

Looking for CG3075-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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