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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3077-RA through 18771 annotations produced 1 hits



(CG3077):

Annotation Number : CG3077
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031457
Gbrowse : chr2L:2764077-2765686 (-) // 99.22 //
Probeset : 1630506_at
Accessions : protein= NP_608709;, nucleotide= NM_134865;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred fr
FlyMine data for FBgn0031457.
BDGP gene expression has embryonic in situ data for CG3077: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0031457 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain143 ± 64 of 4 2.00Up
Head73 ± 64 of 4 1.00None
Eye107 ± 34 of 4 1.47Up
Thoracicoabdominal ganglion134 ± 124 of 4 1.80Up
Salivary gland72 ± 44 of 4 0.99None
Crop95 ± 44 of 4 1.30Up
Midgut64 ± 34 of 4 0.90None
Tubule31 ± 13 of 4 0.40Down
Hindgut176 ± 64 of 4 2.40Up
Heart78 ± 34 of 4 1.07None
Fat body33 ± 74 of 4 0.45Down
Ovary125 ± 24 of 4 1.70Up
Testis57 ± 24 of 4 0.80Down
Male accessory glands131 ± 104 of 4 1.80Up
Virgin spermatheca25 ± 14 of 4 0.34Down
Mated spermatheca30 ± 04 of 4 0.42Down
Adult carcass51 ± 34 of 4 0.70Down
Larval CNS59 ± 24 of 4 0.81Down
Larval Salivary gland72 ± 74 of 4 0.99None
Larval midgut64 ± 44 of 4 0.89None
Larval tubule146 ± 54 of 4 2.00Up
Larval hindgut104 ± 44 of 4 1.43Up
Larval fat body58 ± 54 of 4 0.80None
Larval trachea145 ± 164 of 4 2.00Up
Larval carcass82 ± 94 of 4 1.13None
S2 cells (growing)259 ± 94 of 4 3.56Up
Whole fly73 ± 34 of 4

Looking for CG3077-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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