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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3078-RA through 18771 annotations produced 1 hits



(CG3078):

Annotation Number : CG3078
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023524
Gbrowse : chrX:2148431-2153896 (-) // 100.0 //
Probeset : 1630447_at
Accessions : protein= NP_569991;, nucleotide= NM_130635;
Interpro : 0004965 // GABA-B receptor activity // inferred from sequence or structural similarity /// 0005515 // protein binding //
FlyMine data for FBgn0023524.
BioGrid reports that CG3078 interacts with CG3510 CG3987 CG6057 CG7349 CG7570 CG8677 .
VDRC has 3 RNAi stocks for FBgn0023524 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain634 ± 194 of 435.70Up
Head108 ± 44 of 4 6.10Up
Eye65 ± 54 of 4 3.66Up
Thoracicoabdominal ganglion874 ± 54 of 449.30Up
Salivary gland8 ± 30 of 4 0.49None
Crop3 ± 00 of 4 0.20Down
Midgut4 ± 21 of 4 0.20Down
Tubule3 ± 00 of 4 0.20Down
Hindgut6 ± 11 of 4 0.40Down
Heart1 ± 00 of 4 0.06Down
Fat body5 ± 20 of 4 0.29Down
Ovary1 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands9 ± 21 of 4 0.50Down
Virgin spermatheca1 ± 00 of 4 0.07Down
Mated spermatheca1 ± 00 of 4 0.10Down
Adult carcass15 ± 31 of 4 0.80None
Larval CNS203 ± 134 of 411.49Up
Larval Salivary gland3 ± 10 of 4 0.18Down
Larval midgut2 ± 10 of 4 0.14Down
Larval tubule4 ± 20 of 4 0.20Down
Larval hindgut3 ± 10 of 4 0.17Down
Larval fat body1 ± 00 of 4 0.10Down
Larval trachea2 ± 21 of 4 0.14Down
Larval carcass1 ± 00 of 4 0.08Down
S2 cells (growing)2 ± 00 of 4 0.16Down
Whole fly17 ± 14 of 4

Looking for CG3078-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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