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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3082-RB through 18771 annotations produced 1 hits



lethal (2) k09913 (l(2)k09913):

Annotation Number : CG3082
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021979
Gbrowse : chr2R:18954724-18959398 (+) // 100.0 //
Probeset : 1631028_s_at
Accessions : protein= NP_611751; /// NP_726284; /// NP_726285; /// NP_726286;, nucleotide= NM_137907; /// NM_166582; /// NM_166583; /// NM_166584;
FlyMine data for FBgn0021979.
BDGP gene expression has embryonic in situ data for l(2)k09913: 15 pix of staining in 23 body parts.
VDRC has 1 RNAi stocks for FBgn0021979 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1342 74 of 4 2.20Up
Head1456 404 of 4 2.40Up
Eye2772 564 of 4 4.54Up
Thoracicoabdominal ganglion1875 404 of 4 3.10Up
Salivary gland680 204 of 4 1.11Up
Crop1108 254 of 4 1.80Up
Midgut965 164 of 4 1.60Up
Tubule1255 824 of 4 2.10Up
Hindgut790 104 of 4 1.30Up
Heart1598 284 of 4 2.62Up
Fat body1386 1024 of 4 2.27Up
Ovary528 34 of 4 0.90Down
Testis186 54 of 4 0.30Down
Male accessory glands371 104 of 4 0.60Down
Virgin spermatheca1776 64 of 4 2.91Up
Mated spermatheca1642 624 of 4 2.69Up
Adult carcass939 484 of 4 1.50Up
Larval CNS958 674 of 4 1.57Up
Larval Salivary gland585 174 of 4 0.96None
Larval midgut903 464 of 4 1.48Up
Larval tubule800 314 of 4 1.30Up
Larval hindgut694 364 of 4 1.14None
Larval fat body1821 1834 of 4 3.00Up
Larval trachea1087 444 of 4 1.78Up
Larval carcass728 204 of 4 1.19Up
S2 cells (growing)949 144 of 4 1.56Up
Whole fly610 154 of 4

Looking for CG3082-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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