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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3090-RA through 18771 annotations produced 1 hits



Sox box protein 14 (Sox14):

Annotation Number : CG3090
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005612
Gbrowse : chr2R:19866743-19872700 (+) // 100.0 //
Probeset : 1638050_s_at
Accessions : protein= NP_476894; /// NP_599117;, nucleotide= NM_057546; /// NM_134290;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0005612.
Homophila reports that CG3090 is a close match (6e-15) to human gene SOX18;HLTS (NP_060889), a gene associated with Hypotrichosis-lymphedema-telangiectasia syndrome, 607823 (3).
BioGrid reports that CG3090 interacts with CG7171 .
TRiP has 2 RNAi stocks for FBgn0005612 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005612 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 24 of 4 0.30Down
Head78 44 of 4 1.10None
Eye84 24 of 4 1.18None
Thoracicoabdominal ganglion27 14 of 4 0.40Down
Salivary gland99 44 of 4 1.40Up
Crop102 64 of 4 1.40Up
Midgut118 64 of 4 1.70Up
Tubule80 74 of 4 1.10None
Hindgut88 24 of 4 1.20None
Heart134 64 of 4 1.89Up
Fat body173 104 of 4 2.43Up
Ovary58 24 of 4 0.80None
Testis22 14 of 4 0.30Down
Male accessory glands98 84 of 4 1.40Up
Virgin spermatheca148 74 of 4 2.08Up
Mated spermatheca129 64 of 4 1.82Up
Adult carcass148 64 of 4 2.10Up
Larval CNS62 124 of 4 0.87None
Larval Salivary gland102 144 of 4 1.44None
Larval midgut318 684 of 4 4.45Up
Larval tubule498 194 of 4 7.00Up
Larval hindgut194 274 of 4 2.73Up
Larval fat body302 284 of 4 4.20Up
Larval trachea118 104 of 4 1.65Up
Larval carcass399 1034 of 4 5.60None
S2 cells (growing)92 44 of 4 1.30Up
Whole fly71 64 of 4

Looking for CG3090-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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