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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3097-RA through 18771 annotations produced 1 hits



(CG3097):

Annotation Number : CG3097
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029804
Gbrowse : chrX:5659885-5664812 (-) // 100.0 //
Probeset : 1637432_at
Accessions : protein= NP_572259;, nucleotide= NM_132031;
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activ
FlyMine data for FBgn0029804.
BDGP gene expression has embryonic in situ data for CG3097: 62 pix of staining in 25 body parts.
BioGrid reports that CG3097 interacts with CG8603 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 14 of 4 0.80Down
Head114 104 of 4 1.80Up
Eye14 13 of 4 0.23Down
Thoracicoabdominal ganglion55 34 of 4 0.90None
Salivary gland21 40 of 4 0.34Down
Crop2079 1184 of 432.80Up
Midgut108 54 of 4 1.70Up
Tubule6 10 of 4 0.10Down
Hindgut924 244 of 414.60Up
Heart39 14 of 4 0.63Down
Fat body118 204 of 4 1.86Up
Ovary3 11 of 4 0.10Down
Testis30 34 of 4 0.50Down
Male accessory glands533 274 of 4 8.40Up
Virgin spermatheca539 114 of 4 8.51Up
Mated spermatheca591 754 of 4 9.34Up
Adult carcass91 44 of 4 1.40Up
Larval CNS7 33 of 4 0.11Down
Larval Salivary gland2 00 of 4 0.04Down
Larval midgut17 20 of 4 0.28Down
Larval tubule8 20 of 4 0.10Down
Larval hindgut60 124 of 4 0.95None
Larval fat body9 20 of 4 0.10Down
Larval trachea55 234 of 4 0.88None
Larval carcass20 92 of 4 0.32Down
S2 cells (growing)4 10 of 4 0.07Down
Whole fly63 34 of 4

Looking for CG3097-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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