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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31000-RB through 18771 annotations produced 1 hits



ectopic margin (heph):

Annotation Number : CG31000
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011224
Gbrowse : chr3R:27676735-27819000 (-) // 99.83 //
Probeset : 1637478_s_at
Accessions : protein= NP_001097992; /// NP_001097993; /// NP_001097994; /// NP_001163787; /// NP_001163788; /// NP_001163789; /// NP_001163790; /// NP_001163791; /// NP_001163792; /// NP_001163793; /// NP_001163794; /// NP_524703; /// NP_733460; /// NP_733461; /// NP_788773; /// NP_788774; /// NP_788775; /// NP_788776; /// NP_788777; /// NP_788778; /// NP_788779; /// NP_788780;, nucleotide= NM_001104522; /// NM_001104523; /// NM_001104524; /// NM_001170316; /// NM_001170317; /// NM_001170318; /// NM_001170319; /// NM_001170320; /// NM_001170321; /// NM_001170322; /// NM_001170323; /// NM_079964; /// NM_170581; /// NM_170582; /// NM_176596; /// NM_176597; /// NM_176598; /// NM_176599; /// NM_176600; /// NM_176601; /// NM_176602; /// NM_176603;
Pathway : via spliceosome // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from elec
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 003
FlyMine data for FBgn0011224.
BDGP gene expression has embryonic in situ data for heph: 27 pix of staining in 8 body parts.
BioGrid reports that CG31000 interacts with CG7724 CG10580 .
TRiP has 2 RNAi stocks for FBgn0011224 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011224 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain796 614 of 4 5.60Up
Head71 84 of 4 0.50Down
Eye42 74 of 4 0.30Down
Thoracicoabdominal ganglion304 364 of 4 2.10Up
Salivary gland18 52 of 4 0.13Down
Crop92 74 of 4 0.70Down
Midgut15 23 of 4 0.10Down
Tubule12 02 of 4 0.10Down
Hindgut55 34 of 4 0.40Down
Heart24 53 of 4 0.18Down
Fat body52 134 of 4 0.37Down
Ovary405 154 of 4 2.80Up
Testis40 34 of 4 0.30Down
Male accessory glands118 64 of 4 0.80None
Virgin spermatheca59 54 of 4 0.41Down
Mated spermatheca79 114 of 4 0.55Down
Adult carcass35 34 of 4 0.20Down
Larval CNS468 754 of 4 3.28Up
Larval Salivary gland101 124 of 4 0.71Down
Larval midgut44 84 of 4 0.31Down
Larval tubule26 24 of 4 0.20Down
Larval hindgut241 44 of 4 1.69Up
Larval fat body27 24 of 4 0.20Down
Larval trachea345 824 of 4 2.43Up
Larval carcass533 194 of 4 3.74Up
S2 cells (growing)45 24 of 4 0.32Down
Whole fly142 74 of 4

Looking for CG31000-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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