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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG31007-RA through 18771 annotations produced 1 hits


Annotation Number : CG31007
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051007
Gbrowse : chr3R:26817608-26818097 (-) // 100.0 //
Probeset : 1632662_at
Accessions : protein= NP_733412;, nucleotide= NM_170533;
FlyMine data for FBgn0051007.
VDRC has 3 RNAi stocks for FBgn0051007 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.10Down
Head2 10 of 4 0.00Down
Eye1 00 of 4 0.02Down
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland5 00 of 4 0.07Down
Crop3 10 of 4 0.00Down
Midgut5 10 of 4 0.10Down
Tubule3 00 of 4 0.00Down
Hindgut4 10 of 4 0.10Down
Heart0 00 of 4 0.01Down
Fat body5 30 of 4 0.06Down
Ovary2 00 of 4 0.00Down
Testis1099 424 of 413.10Up
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca2 10 of 4 0.03Down
Mated spermatheca2 00 of 4 0.02Down
Adult carcass9 30 of 4 0.10Down
Larval CNS2 10 of 4 0.03Down
Larval Salivary gland5 10 of 4 0.07Down
Larval midgut12 00 of 4 0.15Down
Larval tubule10 02 of 4 0.10Down
Larval hindgut5 10 of 4 0.06Down
Larval fat body85 383 of 4 1.00None
Larval trachea9 51 of 4 0.12Down
Larval carcass2 00 of 4 0.04Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly84 44 of 4

Looking for CG31007-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime