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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31012-RA through 18771 annotations produced 2 hits



CIN85 and CD2AP orthologue (cindr):

Annotation Number : CG31012
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027598
Gbrowse : chr3R:26648194-26652542 (+) // 100.0 //
Probeset : 1640850_at
Accessions : protein= NP_651827; /// NP_733405; /// NP_733406; /// NP_733407;, nucleotide= NM_143570; /// NM_170526; /// NM_170527; /// NM_170528;
Pathway : 0030496 // midbody // inferred from direct assay /// 0032154 // cleavage furrow // inferred from direct assay /// 004517
Interpro : 0005070 // SH3/SH2 adaptor activity // inferred from sequence or structural similarity /// 0005515 // protein binding //
FlyMine data for FBgn0027598.
Homophila reports that CG31012 is a close match (3e-17) to human gene CD2AP;CMS (NP_036252), a gene associated with Glomerulosclerosis, focal segmental, 3, 607832 (3).
BioGrid reports that CG31012 interacts with CG31038 CG8927 CG3353 CG3780 CG5680 CG9924 .
TRiP has 3 RNAi stocks for FBgn0027598 available for purchase.
VDRC has 1 RNAi stocks for FBgn0027598 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain218 144 of 450.70Up
Head22 44 of 4 5.30Up
Eye19 04 of 4 4.56Up
Thoracicoabdominal ganglion159 34 of 437.10Up
Salivary gland10 41 of 4 2.41None
Crop11 14 of 4 2.60Up
Midgut12 24 of 4 2.80None
Tubule11 03 of 4 2.80Up
Hindgut10 14 of 4 2.50Up
Heart1 00 of 4 0.40Down
Fat body6 22 of 4 1.54None
Ovary4 00 of 4 1.10None
Testis2 01 of 4 0.70None
Male accessory glands9 01 of 4 2.10Up
Virgin spermatheca6 12 of 4 1.39None
Mated spermatheca5 12 of 4 1.28None
Adult carcass7 20 of 4 1.80None
Larval CNS92 104 of 421.55Up
Larval Salivary gland5 01 of 4 1.27None
Larval midgut15 24 of 4 3.53Up
Larval tubule7 04 of 4 1.80Up
Larval hindgut17 34 of 4 4.13Up
Larval fat body4 20 of 4 1.10None
Larval trachea2 10 of 4 0.66None
Larval carcass5 01 of 4 1.24None
S2 cells (growing)2 00 of 4 0.51Down
Whole fly4 02 of 4



CIN85 and CD2AP orthologue (cindr):

Annotation Number : CG31012
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027598
Gbrowse : chr3R:26648194-26652542 (+) // 100.0 //
Probeset : 1633711_a_at
Accessions : protein= NP_651827; /// NP_733405; /// NP_733406; /// NP_733407;, nucleotide= NM_143570; /// NM_170526; /// NM_170527; /// NM_170528;
Pathway : 0030496 // midbody // inferred from direct assay /// 0032154 // cleavage furrow // inferred from direct assay /// 004517
Interpro : 0005070 // SH3/SH2 adaptor activity // inferred from sequence or structural similarity /// 0005515 // protein binding //
FlyMine data for FBgn0027598.
Homophila reports that CG31012 is a close match (3e-17) to human gene CD2AP;CMS (NP_036252), a gene associated with Glomerulosclerosis, focal segmental, 3, 607832 (3).
BioGrid reports that CG31012 interacts with CG31038 CG8927 CG3353 CG3780 CG5680 CG9924 .
TRiP has 3 RNAi stocks for FBgn0027598 available for purchase.
VDRC has 1 RNAi stocks for FBgn0027598 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain200 74 of 4 2.60Up
Head108 54 of 4 1.40Up
Eye207 344 of 4 2.65Up
Thoracicoabdominal ganglion154 114 of 4 2.00Up
Salivary gland59 40 of 4 0.76Down
Crop125 34 of 4 1.60Up
Midgut135 114 of 4 1.70Up
Tubule64 14 of 4 0.80Down
Hindgut141 54 of 4 1.80Up
Heart32 44 of 4 0.41Down
Fat body74 74 of 4 0.95None
Ovary78 34 of 4 1.00None
Testis70 34 of 4 0.90None
Male accessory glands54 64 of 4 0.70Down
Virgin spermatheca49 22 of 4 0.63Down
Mated spermatheca51 43 of 4 0.66Down
Adult carcass97 23 of 4 1.20Up
Larval CNS71 94 of 4 0.92None
Larval Salivary gland104 124 of 4 1.34None
Larval midgut141 64 of 4 1.80Up
Larval tubule120 64 of 4 1.50Up
Larval hindgut163 24 of 4 2.09Up
Larval fat body72 24 of 4 0.90None
Larval trachea71 54 of 4 0.91None
Larval carcass98 104 of 4 1.26None
S2 cells (growing)234 54 of 4 3.00Up
Whole fly78 54 of 4

Looking for CG31012-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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