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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31015-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3R:26471827-26474273 (-) // 100.0 //):

Annotation Number : CG31015
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1627284_at
Accessions : protein= EC:1.13.11.- /// EC:1.14.11.2, nucleotide=
Interpro : 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // inferred from sequence or structural similarity ///


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.10Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion2 ± 01 of 4 0.10Down
Salivary gland14 ± 40 of 4 0.41Down
Crop4 ± 01 of 4 0.10Down
Midgut94 ± 64 of 4 2.70Up
Tubule15 ± 23 of 4 0.40Down
Hindgut10 ± 14 of 4 0.30Down
Heart3 ± 00 of 4 0.09Down
Fat body7 ± 21 of 4 0.21Down
Ovary74 ± 54 of 4 2.20Up
Testis4 ± 10 of 4 0.10Down
Male accessory glands5 ± 10 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.11Down
Mated spermatheca4 ± 11 of 4 0.12Down
Adult carcass13 ± 23 of 4 0.40Down
Larval CNS3 ± 12 of 4 0.11Down
Larval Salivary gland2 ± 00 of 4 0.06Down
Larval midgut307 ± 84 of 4 8.94Up
Larval tubule15 ± 04 of 4 0.40Down
Larval hindgut27 ± 64 of 4 0.80None
Larval fat body4 ± 10 of 4 0.10Down
Larval trachea2 ± 11 of 4 0.07Down
Larval carcass3 ± 01 of 4 0.10Down
S2 cells (growing)1 ± 00 of 4 0.04Down
Whole fly34 ± 44 of 4

Looking for CG31015-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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