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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31030-RA through 18771 annotations produced 1 hits



(CG31030):

Annotation Number : CG31030
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051030
Gbrowse : chr3R:25990410-25992152 (-) // 100.0 //
Probeset : 1625272_at
Accessions : protein= NP_001036775; /// NP_733350;, nucleotide= NM_001043310; /// NM_170471;
Pathway : "0033180 // proton-transporting V-type ATPase
Interpro : V1 domain // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /
FlyMine data for FBgn0051030.
VDRC has 2 RNAi stocks for FBgn0051030 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1751 ± 624 of 417.20Up
Head1098 ± 514 of 410.80Up
Eye2396 ± 1154 of 423.49Up
Thoracicoabdominal ganglion2194 ± 804 of 421.50Up
Salivary gland9 ± 40 of 4 0.09Down
Crop13 ± 13 of 4 0.10Down
Midgut9 ± 12 of 4 0.10Down
Tubule3 ± 10 of 4 0.00Down
Hindgut9 ± 21 of 4 0.10Down
Heart11 ± 22 of 4 0.12Down
Fat body9 ± 52 of 4 0.09Down
Ovary2 ± 00 of 4 0.00Down
Testis50 ± 54 of 4 0.50Down
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.04Down
Mated spermatheca3 ± 00 of 4 0.03Down
Adult carcass46 ± 34 of 4 0.50Down
Larval CNS681 ± 324 of 4 6.68Up
Larval Salivary gland5 ± 10 of 4 0.05Down
Larval midgut10 ± 02 of 4 0.11Down
Larval tubule6 ± 10 of 4 0.10Down
Larval hindgut10 ± 13 of 4 0.10Down
Larval fat body17 ± 51 of 4 0.20Down
Larval trachea55 ± 464 of 4 0.54None
Larval carcass31 ± 14 of 4 0.31Down
S2 cells (growing)5 ± 11 of 4 0.06Down
Whole fly102 ± 94 of 4

Looking for CG31030-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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