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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31032-RA through 18771 annotations produced 1 hits



():

Annotation Number : CG31032
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051032
Gbrowse : chr3R:25684829-25685587 (-) // 100.0 //
Probeset : 1633741_at
Accessions : protein= , nucleotide=
FlyMine data for FBgn0051032.
BDGP gene expression has embryonic in situ data for CG31032: 4 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 24 of 4 2.50Up
Head15 13 of 4 1.00None
Eye23 14 of 4 1.51Up
Thoracicoabdominal ganglion50 24 of 4 3.20Up
Salivary gland9 20 of 4 0.62None
Crop8 00 of 4 0.50Down
Midgut10 10 of 4 0.60Down
Tubule17 03 of 4 1.10Up
Hindgut11 20 of 4 0.70None
Heart9 14 of 4 0.64Down
Fat body8 10 of 4 0.53Down
Ovary19 04 of 4 1.20Up
Testis17 24 of 4 1.10None
Male accessory glands11 30 of 4 0.70None
Virgin spermatheca17 13 of 4 1.12None
Mated spermatheca17 13 of 4 1.13None
Adult carcass10 40 of 4 0.70None
Larval CNS46 74 of 4 3.00Up
Larval Salivary gland10 10 of 4 0.67None
Larval midgut5 10 of 4 0.32Down
Larval tubule12 13 of 4 0.80None
Larval hindgut11 10 of 4 0.75Down
Larval fat body18 22 of 4 1.20None
Larval trachea22 44 of 4 1.41None
Larval carcass10 00 of 4 0.66Down
S2 cells (growing)11 20 of 4 0.76None
Whole fly15 03 of 4

Looking for CG31032-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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