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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31033-RC through 18771 annotations produced 1 hits



(CG31033):

Annotation Number : CG31033
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039705
Gbrowse : chr3R:25652999-25660777 (-) // 100.0 //
Probeset : 1633643_a_at
Accessions : protein= NP_001138123; /// NP_001138124; /// NP_733311; /// NP_733312; /// NP_733313;, nucleotide= NM_001144651; /// NM_001144652; /// NM_170432; /// NM_170433; /// NM_170434;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039705.
Homophila reports that CG31033 is a close match (9e-11) to human gene LIS1;PAFAH1B1 (NP_000421), a gene associated with Lissencephaly-1, 607432 (3);Subcortical laminar heterotopia (3).
BioGrid reports that CG31033 interacts with CG3808 CG7563 CG8902 CG5363 .
TRiP has 1 RNAi stocks for FBgn0039705 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039705 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain96 24 of 4 0.70Down
Head70 14 of 4 0.50Down
Eye78 34 of 4 0.54Down
Thoracicoabdominal ganglion93 14 of 4 0.60Down
Salivary gland96 94 of 4 0.67Down
Crop476 154 of 4 3.30Up
Midgut78 44 of 4 0.50Down
Tubule90 64 of 4 0.60Down
Hindgut167 64 of 4 1.20Up
Heart114 34 of 4 0.79Down
Fat body89 144 of 4 0.62Down
Ovary203 54 of 4 1.40Up
Testis487 134 of 4 3.40Up
Male accessory glands79 44 of 4 0.60Down
Virgin spermatheca108 24 of 4 0.75Down
Mated spermatheca129 84 of 4 0.90None
Adult carcass77 54 of 4 0.50Down
Larval CNS128 134 of 4 0.89None
Larval Salivary gland166 64 of 4 1.15None
Larval midgut115 84 of 4 0.80Down
Larval tubule138 94 of 4 1.00None
Larval hindgut168 14 of 4 1.16Up
Larval fat body109 144 of 4 0.80None
Larval trachea115 154 of 4 0.80Down
Larval carcass268 254 of 4 1.86Up
S2 cells (growing)275 144 of 4 1.91Up
Whole fly144 64 of 4

Looking for CG31033-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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