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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31035-RA through 18771 annotations produced 1 hits



(CG34133):

Annotation Number : CG31035
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083969
Gbrowse : chr3R:25695091-25696892 (+) // 100.0 //
Probeset : 1638836_at
Accessions : protein= NP_001036772; /// NP_001036773;, nucleotide= NM_001043307; /// NM_001043308;
FlyMine data for FBgn0083969.
VDRC has 5 RNAi stocks for FBgn0083969 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 12 of 4 0.60Down
Head12 30 of 4 0.60None
Eye6 10 of 4 0.27Down
Thoracicoabdominal ganglion12 20 of 4 0.50Down
Salivary gland18 60 of 4 0.82None
Crop13 41 of 4 0.60None
Midgut13 10 of 4 0.60Down
Tubule6 00 of 4 0.30Down
Hindgut16 30 of 4 0.70None
Heart5 00 of 4 0.25Down
Fat body16 40 of 4 0.71None
Ovary31 14 of 4 1.40Up
Testis20 24 of 4 0.90None
Male accessory glands12 30 of 4 0.60None
Virgin spermatheca8 10 of 4 0.39Down
Mated spermatheca8 10 of 4 0.37Down
Adult carcass16 50 of 4 0.70None
Larval CNS8 21 of 4 0.36Down
Larval Salivary gland22 30 of 4 0.98None
Larval midgut14 30 of 4 0.65None
Larval tubule13 20 of 4 0.60Down
Larval hindgut20 21 of 4 0.90None
Larval fat body28 63 of 4 1.30None
Larval trachea5 40 of 4 0.26Down
Larval carcass15 12 of 4 0.68Down
S2 cells (growing)56 44 of 4 2.51Up
Whole fly22 10 of 4

Looking for CG31035-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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