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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31037-RA through 18771 annotations produced 1 hits



claret (ca):

Annotation Number : CG31037
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000247
Gbrowse : chr3R:25632969-25640782 (+) // 100.0 //
Probeset : 1629766_at
Accessions : protein= NP_733309;, nucleotide= NM_170430;
FlyMine data for FBgn0000247.
Homophila reports that CG31037 is a close match (2e-12) to human gene COD1;CRD;RP15;RP3;RPGR (NP_000319), a gene associated with Cone dystrophy-1, 304020 (3);Cone-rod dystrophy, 300029 (3);Macular degeneration, X-linked atrophic (3);Retinitis pigmentosa, X-linked with deafness and sinorespiratory infections, 300455 (3);Retinitis pigmentosa, X-linked, with recurrent respiratory infections, 300455 (3);Retinitis pigmentosa-3, 300389 (3).
BioGrid reports that CG31037 interacts with CG9610 .
VDRC has 1 RNAi stocks for FBgn0000247 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain185 ± 14 of 4 1.80Up
Head88 ± 44 of 4 0.80None
Eye91 ± 14 of 4 0.88None
Thoracicoabdominal ganglion174 ± 44 of 4 1.70Up
Salivary gland160 ± 44 of 4 1.54Up
Crop124 ± 84 of 4 1.20None
Midgut98 ± 54 of 4 0.90None
Tubule95 ± 44 of 4 0.90Down
Hindgut105 ± 34 of 4 1.00None
Heart76 ± 64 of 4 0.73Down
Fat body131 ± 104 of 4 1.26Up
Ovary198 ± 84 of 4 1.90Up
Testis71 ± 64 of 4 0.70Down
Male accessory glands99 ± 64 of 4 1.00None
Virgin spermatheca64 ± 24 of 4 0.62Down
Mated spermatheca58 ± 44 of 4 0.56Down
Adult carcass126 ± 64 of 4 1.20Up
Larval CNS200 ± 94 of 4 1.93Up
Larval Salivary gland129 ± 74 of 4 1.24Up
Larval midgut114 ± 34 of 4 1.10None
Larval tubule101 ± 64 of 4 1.00None
Larval hindgut109 ± 34 of 4 1.05None
Larval fat body58 ± 74 of 4 0.60Down
Larval trachea59 ± 34 of 4 0.57Down
Larval carcass121 ± 54 of 4 1.17None
S2 cells (growing)245 ± 44 of 4 2.36Up
Whole fly104 ± 54 of 4

Looking for CG31037-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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