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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31038-RA through 18771 annotations produced 1 hits



(CG31038):

Annotation Number : CG31038
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051038
Gbrowse : chr3R:25702804-25728953 (+) // 100.0 //
Probeset : 1625178_at
Accessions : protein= NP_733326; /// NP_733327; /// NP_733328; /// NP_996307; /// NP_996308; /// NP_996309;, nucleotide= NM_170447; /// NM_170448; /// NM_170449; /// NM_206584; /// NM_206585; /// NM_206586;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051038.
BDGP gene expression has embryonic in situ data for CG31038: 39 pix of staining in 15 body parts.
BioGrid reports that CG31038 interacts with CG5450 CG5642 CG5792 CG6757 .
VDRC has 3 RNAi stocks for FBgn0051038 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 34 of 4 0.50Down
Head459 134 of 4 3.50Up
Eye2080 514 of 415.90Up
Thoracicoabdominal ganglion99 34 of 4 0.80Down
Salivary gland284 214 of 4 2.17Up
Crop415 174 of 4 3.20Up
Midgut78 64 of 4 0.60Down
Tubule111 54 of 4 0.90Down
Hindgut301 44 of 4 2.30Up
Heart187 174 of 4 1.43Up
Fat body25 32 of 4 0.19Down
Ovary47 24 of 4 0.40Down
Testis87 24 of 4 0.70Down
Male accessory glands275 124 of 4 2.10Up
Virgin spermatheca191 64 of 4 1.47Up
Mated spermatheca295 314 of 4 2.26Up
Adult carcass257 134 of 4 2.00Up
Larval CNS59 64 of 4 0.46Down
Larval Salivary gland97 94 of 4 0.75Down
Larval midgut40 44 of 4 0.31Down
Larval tubule93 64 of 4 0.70Down
Larval hindgut211 44 of 4 1.62Up
Larval fat body23 42 of 4 0.20Down
Larval trachea558 894 of 4 4.27Up
Larval carcass337 74 of 4 2.58Up
S2 cells (growing)72 34 of 4 0.55Down
Whole fly130 64 of 4

Looking for CG31038-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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