Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG31039-RA through 18771 annotations produced 1 hits


Jonah 99C Alpha (Jon99Ci):

Annotation Number : CG31039
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003358
Gbrowse : chr3R:25750946-25751907 (-) // 100.0 //
Probeset : 1624092_at
Accessions : protein= NP_524555;, nucleotide= NM_079831;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004175 // endopeptidase activity // non-tracea
FlyMine data for FBgn0003358.
BDGP gene expression has embryonic in situ data for Ser99Dc: 8 pix of staining in 1 body parts.
Homophila reports that CG31039 is a close match (6e-11) to human gene PC;PROC (NP_000303), a gene associated with Thrombophilia due to protein C deficiency, autosomal dominant, 176860 (3);Thrombophilia due to protein C deficiency, autosomal recessive, 612304 (3).
VDRC has 2 RNAi stocks for FBgn0003358 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head11 ± 101 of 4 0.00Down
Eye5 ± 31 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland255 ± 174 of 4 0.25Down
Crop4 ± 10 of 4 0.00Down
Midgut6335 ± 1794 of 4 6.10Up
Tubule5 ± 00 of 4 0.00Down
Hindgut4 ± 20 of 4 0.00Down
Heart1 ± 00 of 4 0.00Down
Fat body4 ± 30 of 4 0.00Down
Ovary0 ± 00 of 4 0.00Down
Testis10 ± 51 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca13 ± 10 of 4 0.01Down
Mated spermatheca12 ± 40 of 4 0.01Down
Adult carcass6 ± 20 of 4 0.00Down
Larval CNS4 ± 30 of 4 0.00Down
Larval Salivary gland2 ± 00 of 4 0.00Down
Larval midgut3963 ± 1744 of 4 3.85Up
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.00Down
Larval fat body4 ± 00 of 4 0.00Down
Larval trachea0 ± 00 of 4 0.00Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly1030 ± 1584 of 4

Looking for CG31039-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime