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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3104-RA through 18771 annotations produced 1 hits



(CG3104):

Annotation Number : CG3104
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031473
Gbrowse : chr2L:2849731-2855749 (-) // 100.0 //
Probeset : 1626262_s_at
Accessions : protein= NP_608724; /// NP_722852;, nucleotide= NM_134880; /// NM_164505;
FlyMine data for FBgn0031473.
BDGP gene expression has embryonic in situ data for CG3104: 4 pix of staining in 1 body parts.
Homophila reports that CG3104 is a close match (3e-11) to human gene BARD1 (NP_000456), a gene associated with {Breast cancer, susceptibility to}, 114480 (3).
VDRC has 3 RNAi stocks for FBgn0031473 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 ± 44 of 420.60Up
Head22 ± 34 of 4 5.20Up
Eye7 ± 11 of 4 1.72None
Thoracicoabdominal ganglion48 ± 74 of 411.50Up
Salivary gland78 ± 83 of 418.45Up
Crop2 ± 00 of 4 0.50None
Midgut3 ± 10 of 4 0.90None
Tubule4 ± 00 of 4 0.90None
Hindgut9 ± 20 of 4 2.10None
Heart1 ± 00 of 4 0.37None
Fat body2 ± 20 of 4 0.67None
Ovary5 ± 10 of 4 1.40None
Testis1 ± 00 of 4 0.20None
Male accessory glands2 ± 00 of 4 0.50None
Virgin spermatheca1 ± 00 of 4 0.36None
Mated spermatheca2 ± 10 of 4 0.56None
Adult carcass1 ± 00 of 4 0.40None
Larval CNS16 ± 22 of 4 3.91Up
Larval Salivary gland2 ± 00 of 4 0.54None
Larval midgut2 ± 00 of 4 0.54None
Larval tubule3 ± 10 of 4 0.90None
Larval hindgut2 ± 10 of 4 0.63None
Larval fat body2 ± 10 of 4 0.70None
Larval trachea1 ± 00 of 4 0.46None
Larval carcass1 ± 00 of 4 0.41None
S2 cells (growing)1 ± 00 of 4 0.30None
Whole fly4 ± 10 of 4

Looking for CG3104-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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