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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31044-RA through 18771 annotations produced 1 hits



(CR31044):

Annotation Number : CG31044
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051044
Gbrowse : chr3R:25042635-25045389 (+) // 100.0 //
Probeset : 1627274_at
Accessions : protein= NP_733279;, nucleotide= NM_170400;
FlyMine data for FBgn0051044.
BDGP gene expression has embryonic in situ data for CG31044: 13 pix of staining in 3 body parts.
TRiP has 1 RNAi stocks for FBgn0051044 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.50None
Head5 ± 10 of 4 0.80None
Eye9 ± 14 of 4 1.42None
Thoracicoabdominal ganglion6 ± 12 of 4 1.00None
Salivary gland8 ± 31 of 4 1.33None
Crop6 ± 12 of 4 1.00None
Midgut8 ± 11 of 4 1.30None
Tubule13 ± 03 of 4 2.10Up
Hindgut8 ± 12 of 4 1.30None
Heart12 ± 13 of 4 1.90Up
Fat body14 ± 14 of 4 2.18Up
Ovary7 ± 02 of 4 1.10None
Testis3 ± 00 of 4 0.60None
Male accessory glands42 ± 64 of 4 6.40Up
Virgin spermatheca12 ± 13 of 4 1.86Up
Mated spermatheca6 ± 11 of 4 1.01None
Adult carcass9 ± 20 of 4 1.50None
Larval CNS10 ± 14 of 4 1.57None
Larval Salivary gland9 ± 13 of 4 1.42None
Larval midgut9 ± 11 of 4 1.37None
Larval tubule19 ± 04 of 4 2.90Up
Larval hindgut8 ± 12 of 4 1.30None
Larval fat body18 ± 13 of 4 2.70Up
Larval trachea9 ± 14 of 4 1.39None
Larval carcass11 ± 14 of 4 1.67Up
S2 cells (growing)15 ± 14 of 4 2.31Up
Whole fly6 ± 10 of 4

Looking for CG31044-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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