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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31045-RE through 18771 annotations produced 1 hits



myosin XVII (PDZ) (Mhcl):

Annotation Number : CG31045
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026059
Gbrowse : chr3R:11894244-11923310 (-) // 100.0 //
Probeset : 1632231_a_at
Accessions : protein= NP_001036715; /// NP_001036716; /// NP_732108; /// NP_732109; /// NP_732110; /// NP_732111;, nucleotide= NM_001043250; /// NM_001043251; /// NM_169700; /// NM_169701; /// NM_169703; /// NM_170650;
Pathway : 0016459 // myosin complex // inferred from sequence or structural similarity /// 0016459 // myosin complex // inferred f
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from ele
FlyMine data for FBgn0026059.
BDGP gene expression has embryonic in situ data for Mhcl: 24 pix of staining in 20 body parts.
Homophila reports that CG31045 is a close match (2e-11) to human gene MYH14;KIAA2034;DFNA4 (NP_079005), a gene associated with Deafness, autosomal dominant 4, 600652 (3).
BioGrid reports that CG31045 interacts with CG4209 CG5355 CG3204 CG3927 CG4847 CG6196 CG7392 CG7660 CG7763 CG8947 CG9195 CG9745 CG32850 .
TRiP has 1 RNAi stocks for FBgn0026059 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 ± 24 of 4 1.50None
Head65 ± 34 of 4 2.00Up
Eye403 ± 284 of 412.10Up
Thoracicoabdominal ganglion33 ± 34 of 4 1.00None
Salivary gland101 ± 114 of 4 3.03Up
Crop126 ± 54 of 4 3.80Up
Midgut20 ± 13 of 4 0.60Down
Tubule19 ± 13 of 4 0.60Down
Hindgut36 ± 24 of 4 1.10None
Heart56 ± 54 of 4 1.68Up
Fat body21 ± 24 of 4 0.65Down
Ovary35 ± 14 of 4 1.10None
Testis32 ± 24 of 4 1.00None
Male accessory glands42 ± 54 of 4 1.30None
Virgin spermatheca14 ± 21 of 4 0.43Down
Mated spermatheca14 ± 14 of 4 0.42Down
Adult carcass37 ± 64 of 4 1.10None
Larval CNS24 ± 24 of 4 0.73Down
Larval Salivary gland9 ± 30 of 4 0.29Down
Larval midgut19 ± 42 of 4 0.59Down
Larval tubule37 ± 24 of 4 1.10None
Larval hindgut46 ± 04 of 4 1.39Up
Larval fat body41 ± 24 of 4 1.30Up
Larval trachea32 ± 144 of 4 0.97None
Larval carcass136 ± 94 of 4 4.08Up
S2 cells (growing)18 ± 14 of 4 0.57Down
Whole fly33 ± 14 of 4

Looking for CG31045-RE. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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