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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3105-RA through 18771 annotations produced 1 hits

PAS kinase (Pask):

Annotation Number : CG3105
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034950
Gbrowse : chr2R:19876239-19879573 (+) // 100.0 //
Probeset : 1634631_at
Accessions : protein= NP_611864;, nucleotide= NM_138020;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0034950.
Homophila reports that CG3105 is a close match (6e-11) to human gene CDS1;CHEK2;CHK2;LFS2;RAD53 (NP_665861), a gene associated with Li-Fraumeni syndrome, 609265 (3);Osteosarcoma, somatic, 259500 (3);Prostate cancer, familial, 176807 (3);{Breast and colorectal cancer, susceptibility to} (3);{Breast cancer, susceptibility to}, 114480 (3).
BioGrid reports that CG3105 interacts with CG7583 .
TRiP has 1 RNAi stocks for FBgn0034950 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034950 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain212 64 of 420.20Up
Head126 14 of 411.90Up
Eye373 184 of 435.45Up
Thoracicoabdominal ganglion195 84 of 418.50Up
Salivary gland5 40 of 4 0.50None
Crop4 12 of 4 0.40Down
Midgut7 01 of 4 0.70Down
Tubule1 00 of 4 0.20Down
Hindgut4 00 of 4 0.40Down
Heart3 10 of 4 0.29Down
Fat body2 20 of 4 0.27Down
Ovary0 00 of 4 0.10Down
Testis3 11 of 4 0.30Down
Male accessory glands6 21 of 4 0.60None
Virgin spermatheca2 10 of 4 0.19Down
Mated spermatheca2 10 of 4 0.26Down
Adult carcass4 10 of 4 0.40Down
Larval CNS80 74 of 4 7.61Up
Larval Salivary gland1 00 of 4 0.09Down
Larval midgut3 10 of 4 0.32Down
Larval tubule1 00 of 4 0.20Down
Larval hindgut3 10 of 4 0.34Down
Larval fat body2 10 of 4 0.20Down
Larval trachea5 51 of 4 0.50None
Larval carcass3 00 of 4 0.34Down
S2 cells (growing)13 14 of 4 1.26None
Whole fly10 04 of 4

Looking for CG3105-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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