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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3105-RA through 18771 annotations produced 1 hits



PAS kinase (Pask):

Annotation Number : CG3105
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034950
Gbrowse : chr2R:19876239-19879573 (+) // 100.0 //
Probeset : 1634631_at
Accessions : protein= NP_611864;, nucleotide= NM_138020;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0034950.
Homophila reports that CG3105 is a close match (6e-11) to human gene CDS1;CHEK2;CHK2;LFS2;RAD53 (NP_665861), a gene associated with Li-Fraumeni syndrome, 609265 (3);Osteosarcoma, somatic, 259500 (3);Prostate cancer, familial, 176807 (3);{Breast and colorectal cancer, susceptibility to} (3);{Breast cancer, susceptibility to}, 114480 (3).
BioGrid reports that CG3105 interacts with CG7583 .
TRiP has 1 RNAi stocks for FBgn0034950 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034950 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain212 ± 64 of 420.20Up
Head126 ± 14 of 411.90Up
Eye373 ± 184 of 435.45Up
Thoracicoabdominal ganglion195 ± 84 of 418.50Up
Salivary gland5 ± 40 of 4 0.50None
Crop4 ± 12 of 4 0.40Down
Midgut7 ± 01 of 4 0.70Down
Tubule1 ± 00 of 4 0.20Down
Hindgut4 ± 00 of 4 0.40Down
Heart3 ± 10 of 4 0.29Down
Fat body2 ± 20 of 4 0.27Down
Ovary0 ± 00 of 4 0.10Down
Testis3 ± 11 of 4 0.30Down
Male accessory glands6 ± 21 of 4 0.60None
Virgin spermatheca2 ± 10 of 4 0.19Down
Mated spermatheca2 ± 10 of 4 0.26Down
Adult carcass4 ± 10 of 4 0.40Down
Larval CNS80 ± 74 of 4 7.61Up
Larval Salivary gland1 ± 00 of 4 0.09Down
Larval midgut3 ± 10 of 4 0.32Down
Larval tubule1 ± 00 of 4 0.20Down
Larval hindgut3 ± 10 of 4 0.34Down
Larval fat body2 ± 10 of 4 0.20Down
Larval trachea5 ± 51 of 4 0.50None
Larval carcass3 ± 00 of 4 0.34Down
S2 cells (growing)13 ± 14 of 4 1.26None
Whole fly10 ± 04 of 4

Looking for CG3105-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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