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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31061-RA through 18771 annotations produced 1 hits



Gustatory receptor 98d (Gr98d):

Annotation Number : CG31061
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046885
Gbrowse : chr3R:23371773-23373184 (+) // 100.0 //
Probeset : 1628480_at
Accessions : protein= NP_733214;, nucleotide= NM_170335;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0046885.
VDRC has 3 RNAi stocks for FBgn0046885 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 1.60None
Head4 ± 10 of 4 2.50None
Eye2 ± 11 of 4 1.43None
Thoracicoabdominal ganglion4 ± 21 of 4 2.30None
Salivary gland13 ± 11 of 4 6.75Up
Crop4 ± 10 of 4 2.40None
Midgut4 ± 10 of 4 2.30None
Tubule2 ± 00 of 4 1.30None
Hindgut4 ± 10 of 4 2.10None
Heart2 ± 00 of 4 1.04None
Fat body3 ± 11 of 4 1.86None
Ovary1 ± 00 of 4 0.60None
Testis3 ± 10 of 4 1.60None
Male accessory glands4 ± 10 of 4 2.20None
Virgin spermatheca4 ± 10 of 4 2.35None
Mated spermatheca3 ± 11 of 4 1.61None
Adult carcass4 ± 10 of 4 2.20None
Larval CNS2 ± 01 of 4 1.38None
Larval Salivary gland7 ± 10 of 4 3.62Up
Larval midgut3 ± 10 of 4 1.78None
Larval tubule2 ± 00 of 4 1.10None
Larval hindgut4 ± 02 of 4 2.41None
Larval fat body3 ± 11 of 4 1.80None
Larval trachea3 ± 10 of 4 1.56None
Larval carcass0 ± 00 of 4 0.44None
S2 cells (growing)2 ± 10 of 4 1.19None
Whole fly2 ± 00 of 4

Looking for CG31061-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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