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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31062-RA through 18771 annotations produced 1 hits



downstream of eyeless (side):

Annotation Number : CG31062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016061
Gbrowse : chr3R:23202303-23244247 (-) // 100.0 //
Probeset : 1623547_at
Accessions : protein= NP_001138117; /// NP_524530;, nucleotide= NM_001144645; /// NM_079806;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0016061.
Homophila reports that CG31062 is a close match (4e-15) to human gene ARMD1;FBLN6;FIBL6;HMCN1 (NP_114141), a gene associated with {Macular degeneration, age-related, 1}, 603075 (3).
BioGrid reports that CG31062 interacts with CG9160 .
VDRC has 2 RNAi stocks for FBgn0016061 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 14 of 4 5.00Up
Head9 12 of 4 1.80None
Eye5 11 of 4 1.00None
Thoracicoabdominal ganglion25 44 of 4 4.80Up
Salivary gland9 30 of 4 1.76None
Crop7 30 of 4 1.30None
Midgut8 20 of 4 1.60None
Tubule3 00 of 4 0.70Down
Hindgut4 00 of 4 0.80None
Heart12 22 of 4 2.42Up
Fat body7 10 of 4 1.39None
Ovary4 00 of 4 0.90None
Testis4 00 of 4 0.90None
Male accessory glands17 20 of 4 3.20Up
Virgin spermatheca5 10 of 4 0.94None
Mated spermatheca3 00 of 4 0.62None
Adult carcass7 20 of 4 1.50None
Larval CNS10 04 of 4 2.01Up
Larval Salivary gland12 13 of 4 2.27Up
Larval midgut6 10 of 4 1.20None
Larval tubule5 10 of 4 1.10None
Larval hindgut6 00 of 4 1.19None
Larval fat body8 20 of 4 1.50None
Larval trachea2 10 of 4 0.53None
Larval carcass2 00 of 4 0.40None
S2 cells (growing)2 00 of 4 0.51None
Whole fly5 10 of 4

Looking for CG31062-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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