FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG31062-RA through 18771 annotations produced 1 hits

downstream of eyeless (side):

Annotation Number : CG31062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016061
Gbrowse : chr3R:23202303-23244247 (-) // 100.0 //
Probeset : 1623547_at
Accessions : protein= NP_001138117; /// NP_524530;, nucleotide= NM_001144645; /// NM_079806;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0016061.
Homophila reports that CG31062 is a close match (4e-15) to human gene ARMD1;FBLN6;FIBL6;HMCN1 (NP_114141), a gene associated with {Macular degeneration, age-related, 1}, 603075 (3).
BioGrid reports that CG31062 interacts with CG9160 .
VDRC has 2 RNAi stocks for FBgn0016061 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	26 ± 1	4 of 4	5.00	Up
Head	9 ± 1	2 of 4	1.80	None
Eye	5 ± 1	1 of 4	1.00	None
Thoracicoabdominal ganglion	25 ± 4	4 of 4	4.80	Up
Salivary gland	9 ± 3	0 of 4	1.76	None
Crop	7 ± 3	0 of 4	1.30	None
Midgut	8 ± 2	0 of 4	1.60	None
Tubule	3 ± 0	0 of 4	0.70	Down
Hindgut	4 ± 0	0 of 4	0.80	None
Heart	12 ± 2	2 of 4	2.42	Up
Fat body	7 ± 1	0 of 4	1.39	None
Ovary	4 ± 0	0 of 4	0.90	None
Testis	4 ± 0	0 of 4	0.90	None
Male accessory glands	17 ± 2	0 of 4	3.20	Up
Virgin spermatheca	5 ± 1	0 of 4	0.94	None
Mated spermatheca	3 ± 0	0 of 4	0.62	None
Adult carcass	7 ± 2	0 of 4	1.50	None
Larval CNS	10 ± 0	4 of 4	2.01	Up
Larval Salivary gland	12 ± 1	3 of 4	2.27	Up
Larval midgut	6 ± 1	0 of 4	1.20	None
Larval tubule	5 ± 1	0 of 4	1.10	None
Larval hindgut	6 ± 0	0 of 4	1.19	None
Larval fat body	8 ± 2	0 of 4	1.50	None
Larval trachea	2 ± 1	0 of 4	0.53	None
Larval carcass	2 ± 0	0 of 4	0.40	None
S2 cells (growing)	2 ± 0	0 of 4	0.51	None
Whole fly	5 ± 1	0 of 4

Looking for CG31062-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720