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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31065-RA through 18771 annotations produced 1 hits



(CG31065):

Annotation Number : CG31065
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051065
Gbrowse : chr3R:22988845-22991218 (+) // 100.0 //
Probeset : 1628366_at
Accessions : protein= NP_001097944;, nucleotide= NM_001104474;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005272 // sodium channel activity // inferred from sequence or structural similarity /// 0005272 // sodium channel acti
FlyMine data for FBgn0051065.
TRiP has 1 RNAi stocks for FBgn0051065 available for purchase.
VDRC has 3 RNAi stocks for FBgn0051065 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.40None
Head6 ± 00 of 4 1.00None
Eye5 ± 10 of 4 0.85None
Thoracicoabdominal ganglion9 ± 01 of 4 1.50None
Salivary gland15 ± 51 of 4 2.48None
Crop13 ± 10 of 4 2.10Up
Midgut11 ± 10 of 4 1.90Up
Tubule5 ± 00 of 4 0.80Down
Hindgut7 ± 11 of 4 1.30None
Heart2 ± 10 of 4 0.38None
Fat body10 ± 40 of 4 1.63None
Ovary3 ± 00 of 4 0.60None
Testis4 ± 10 of 4 0.70None
Male accessory glands10 ± 11 of 4 1.70None
Virgin spermatheca6 ± 00 of 4 1.06None
Mated spermatheca6 ± 11 of 4 1.04None
Adult carcass13 ± 40 of 4 2.20None
Larval CNS3 ± 10 of 4 0.49None
Larval Salivary gland8 ± 10 of 4 1.38None
Larval midgut14 ± 32 of 4 2.29None
Larval tubule8 ± 00 of 4 1.30None
Larval hindgut7 ± 10 of 4 1.26None
Larval fat body8 ± 40 of 4 1.30None
Larval trachea6 ± 30 of 4 0.97None
Larval carcass4 ± 10 of 4 0.74None
S2 cells (growing)2 ± 10 of 4 0.48None
Whole fly6 ± 11 of 4

Looking for CG31065-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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