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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31069-RA through 18771 annotations produced 1 hits



spindle D (spn-D):

Annotation Number : CG31069
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003482
Gbrowse : chr3R:22991439-22992843 (+) // 100.0 //
Probeset : 1630151_at
Accessions : protein= NP_733200;, nucleotide= NM_170321;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic ann
FlyMine data for FBgn0003482.
Homophila reports that CG31069 is a close match (4e-11) to human gene XRCC3 (NP_005423), a gene associated with {Breast cancer, susceptibility to} (3);{Melanoma, cutaneous malignant, susceptibility to} (3).
BioGrid reports that CG31069 interacts with CG3325 CG10895 CG3158 .
VDRC has 3 RNAi stocks for FBgn0003482 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.20Down
Head3 10 of 4 0.40Down
Eye2 10 of 4 0.24Down
Thoracicoabdominal ganglion3 00 of 4 0.30Down
Salivary gland8 20 of 4 0.82None
Crop4 10 of 4 0.40None
Midgut9 20 of 4 0.90None
Tubule6 00 of 4 0.60Down
Hindgut6 10 of 4 0.70None
Heart5 10 of 4 0.57None
Fat body9 20 of 4 0.91None
Ovary29 14 of 4 2.90Up
Testis5 11 of 4 0.50None
Male accessory glands1 00 of 4 0.20Down
Virgin spermatheca5 10 of 4 0.51None
Mated spermatheca3 10 of 4 0.34Down
Adult carcass4 20 of 4 0.50None
Larval CNS10 30 of 4 1.02None
Larval Salivary gland3 10 of 4 0.38Down
Larval midgut3 10 of 4 0.35Down
Larval tubule2 00 of 4 0.20Down
Larval hindgut3 00 of 4 0.35Down
Larval fat body3 10 of 4 0.40Down
Larval trachea3 10 of 4 0.37Down
Larval carcass5 20 of 4 0.54None
S2 cells (growing)19 20 of 4 1.97Up
Whole fly10 20 of 4

Looking for CG31069-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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