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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31075-RA through 18771 annotations produced 1 hits



/// (CG31075 /// DsecCG31075):

Annotation Number : CG31075
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051075
Gbrowse : chr3R:22811343-22814237 (-) // 100.0 //
Probeset : 1636764_at
Accessions : protein= NP_733183;, nucleotide= NM_170304;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // infer
Interpro : 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from sequence or structural similarity /// 0004029 // aldeh
FlyMine data for FBgn0051075.
BDGP gene expression has embryonic in situ data for CG31075: 4 pix of staining in 1 body parts.
Homophila reports that CG31075 is a close match (4e-25) to human gene ALDH10;ALDH3A2;FALDH;SLS (NP_001026976), a gene associated with Sjogren-Larsson syndrome, 270200 (3).
VDRC has 2 RNAi stocks for FBgn0051075 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 44 of 4 0.60Down
Head314 474 of 4 2.40Up
Eye70 94 of 4 0.54Down
Thoracicoabdominal ganglion96 44 of 4 0.70Down
Salivary gland275 124 of 4 2.11Up
Crop36 34 of 4 0.30Down
Midgut90 84 of 4 0.70Down
Tubule382 814 of 4 2.90Up
Hindgut88 74 of 4 0.70Down
Heart147 94 of 4 1.13None
Fat body57 94 of 4 0.44Down
Ovary122 14 of 4 0.90None
Testis201 34 of 4 1.50Up
Male accessory glands364 204 of 4 2.80Up
Virgin spermatheca311 174 of 4 2.39Up
Mated spermatheca146 74 of 4 1.12None
Adult carcass208 134 of 4 1.60Up
Larval CNS131 44 of 4 1.00None
Larval Salivary gland2009 1074 of 415.39Up
Larval midgut73 94 of 4 0.56Down
Larval tubule346 154 of 4 2.70Up
Larval hindgut192 454 of 4 1.47None
Larval fat body6801 7514 of 452.10Up
Larval trachea413 694 of 4 3.17Up
Larval carcass614 934 of 4 4.71Up
S2 cells (growing)248 44 of 4 1.90Up
Whole fly130 74 of 4

Looking for CG31075-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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