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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG31076-RA through 18771 annotations produced 1 hits


Annotation Number : CG31076
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051076
Gbrowse : chr3R:22814756-22815600 (-) // 100.0 //
Probeset : 1632372_at
Accessions : protein= NP_733184;, nucleotide= NM_170305;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0051076.
BioGrid reports that CG31076 interacts with CG8024 .
VDRC has 2 RNAi stocks for FBgn0051076 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.30Down
Head6 10 of 4 0.40Down
Eye27 13 of 4 1.55Up
Thoracicoabdominal ganglion5 10 of 4 0.30Down
Salivary gland9 20 of 4 0.51Down
Crop4 10 of 4 0.20Down
Midgut69 84 of 4 3.90Up
Tubule325 294 of 418.30Up
Hindgut38 22 of 4 2.20Up
Heart1 00 of 4 0.09Down
Fat body5 50 of 4 0.32Down
Ovary1 00 of 4 0.10Down
Testis4 10 of 4 0.20Down
Male accessory glands7 20 of 4 0.40Down
Virgin spermatheca7 21 of 4 0.41Down
Mated spermatheca6 10 of 4 0.36Down
Adult carcass7 20 of 4 0.40Down
Larval CNS13 61 of 4 0.74None
Larval Salivary gland3192 1104 of 4179.87Up
Larval midgut206 294 of 411.61Up
Larval tubule535 154 of 430.20Up
Larval hindgut41 34 of 4 2.34Up
Larval fat body2372 2454 of 4133.70Up
Larval trachea43 44 of 4 2.42Up
Larval carcass11 10 of 4 0.65Down
S2 cells (growing)7 10 of 4 0.43Down
Whole fly17 10 of 4

Looking for CG31076-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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