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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31080-RA through 18771 annotations produced 1 hits



CG31080 (TwdlH):

Annotation Number : CG31080
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051080
Gbrowse : chr3R:22459455-22460437 (+) // 100.0 //
Probeset : 1625483_at
Accessions : protein= NP_651490;, nucleotide= NM_143233;
FlyMine data for FBgn0051080.
BioGrid reports that CG31080 interacts with CG3428 .
VDRC has 1 RNAi stocks for FBgn0051080 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 13 of 4 1.00None
Head17 ± 23 of 4 1.20None
Eye9 ± 10 of 4 0.66None
Thoracicoabdominal ganglion24 ± 22 of 4 1.70Up
Salivary gland53 ± 143 of 4 3.70None
Crop21 ± 31 of 4 1.50None
Midgut35 ± 70 of 4 2.50None
Tubule11 ± 01 of 4 0.80Down
Hindgut27 ± 53 of 4 1.90None
Heart6 ± 10 of 4 0.45None
Fat body17 ± 82 of 4 1.23None
Ovary12 ± 22 of 4 0.90None
Testis7 ± 21 of 4 0.50None
Male accessory glands29 ± 42 of 4 2.00Up
Virgin spermatheca10 ± 40 of 4 0.76None
Mated spermatheca16 ± 10 of 4 1.13None
Adult carcass22 ± 61 of 4 1.60None
Larval CNS14 ± 52 of 4 1.00None
Larval Salivary gland30 ± 23 of 4 2.10Up
Larval midgut30 ± 33 of 4 2.12Up
Larval tubule22 ± 32 of 4 1.50None
Larval hindgut25 ± 43 of 4 1.79None
Larval fat body20 ± 21 of 4 1.50None
Larval trachea10 ± 10 of 4 0.71None
Larval carcass29 ± 10 of 4 2.02Up
S2 cells (growing)14 ± 30 of 4 1.04None
Whole fly14 ± 24 of 4

Looking for CG31080-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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