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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31084-RA through 18771 annotations produced 1 hits



(CR31084):

Annotation Number : CG31084
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051084
Gbrowse : chr3R:22251075-22254130 (+) // 100.0 //
Probeset : 1627438_at
Accessions : protein= NP_733149;, nucleotide= NM_170270;
FlyMine data for FBgn0051084.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.90None
Head5 ± 21 of 4 1.00None
Eye4 ± 10 of 4 0.87None
Thoracicoabdominal ganglion8 ± 00 of 4 1.50None
Salivary gland19 ± 60 of 4 3.52None
Crop8 ± 20 of 4 1.40None
Midgut13 ± 20 of 4 2.50Up
Tubule5 ± 10 of 4 1.00None
Hindgut12 ± 20 of 4 2.30None
Heart15 ± 23 of 4 2.84Up
Fat body20 ± 13 of 4 3.73Up
Ovary3 ± 00 of 4 0.60None
Testis3 ± 10 of 4 0.60None
Male accessory glands7 ± 20 of 4 1.30None
Virgin spermatheca37 ± 54 of 4 6.74Up
Mated spermatheca33 ± 24 of 4 5.95Up
Adult carcass24 ± 31 of 4 4.50Up
Larval CNS4 ± 11 of 4 0.89None
Larval Salivary gland11 ± 20 of 4 1.98None
Larval midgut12 ± 20 of 4 2.21None
Larval tubule3 ± 10 of 4 0.60None
Larval hindgut9 ± 02 of 4 1.74None
Larval fat body26 ± 33 of 4 4.70Up
Larval trachea9 ± 31 of 4 1.75None
Larval carcass9 ± 00 of 4 1.63None
S2 cells (growing)5 ± 22 of 4 1.05None
Whole fly5 ± 10 of 4

Looking for CG31084-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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