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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31087-RA through 18771 annotations produced 1 hits



(CG31087):

Annotation Number : CG31087
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051087
Gbrowse : chr3R:21136859-21138375 (-) // 100.0 //
Probeset : 1624569_at
Accessions : protein= NP_733100;, nucleotide= NM_170221;
FlyMine data for FBgn0051087.
VDRC has 3 RNAi stocks for FBgn0051087 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.02Down
Crop2 ± 00 of 4 0.00Down
Midgut1401 ± 564 of 416.00Up
Tubule40 ± 93 of 4 0.50Down
Hindgut226 ± 44 of 4 2.60Up
Heart3 ± 10 of 4 0.04Down
Fat body9 ± 70 of 4 0.10Down
Ovary1 ± 00 of 4 0.00Down
Testis9 ± 11 of 4 0.10Down
Male accessory glands9 ± 20 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca1 ± 00 of 4 0.02Down
Adult carcass5 ± 30 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland2 ± 00 of 4 0.03Down
Larval midgut1096 ± 394 of 412.53Up
Larval tubule334 ± 434 of 4 3.80Up
Larval hindgut1043 ± 364 of 411.93Up
Larval fat body2 ± 00 of 4 0.00Down
Larval trachea4 ± 10 of 4 0.05Down
Larval carcass3 ± 10 of 4 0.04Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly87 ± 154 of 4

Looking for CG31087-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime