FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3109-RA through 18771 annotations produced 1 hits

mitochondrial ribosomal protein L16 (mRpL16):

Annotation Number : CG3109
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023519
Gbrowse : chrX:1784331-1785313 (+) // 100.0 //
Probeset : 1629936_at
Accessions : protein= NP_525041;, nucleotide= NM_080302;
Pathway : 0005762 // mitochondrial large ribosomal subunit // inferred from sequence or structural similarity /// 0005840 // ribos
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0023519.
BDGP gene expression has embryonic in situ data for mRpL16: 13 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0023519 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	296 ± 13	4 of 4	1.20	Up
Head	202 ± 4	4 of 4	0.80	Down
Eye	137 ± 7	4 of 4	0.56	Down
Thoracicoabdominal ganglion	366 ± 12	4 of 4	1.50	Up
Salivary gland	170 ± 6	4 of 4	0.69	Down
Crop	201 ± 16	4 of 4	0.80	None
Midgut	141 ± 10	4 of 4	0.60	Down
Tubule	189 ± 18	4 of 4	0.80	Down
Hindgut	240 ± 8	4 of 4	1.00	None
Heart	180 ± 6	4 of 4	0.73	Down
Fat body	174 ± 16	4 of 4	0.71	Down
Ovary	364 ± 1	4 of 4	1.50	Up
Testis	200 ± 3	4 of 4	0.80	Down
Male accessory glands	169 ± 10	4 of 4	0.70	Down
Virgin spermatheca	149 ± 7	4 of 4	0.61	Down
Mated spermatheca	168 ± 8	4 of 4	0.69	Down
Adult carcass	216 ± 18	4 of 4	0.90	None
Larval CNS	355 ± 3	4 of 4	1.44	Up
Larval Salivary gland	223 ± 6	4 of 4	0.91	None
Larval midgut	96 ± 15	4 of 4	0.39	Down
Larval tubule	131 ± 5	4 of 4	0.50	Down
Larval hindgut	263 ± 14	4 of 4	1.07	None
Larval fat body	163 ± 8	3 of 4	0.70	Down
Larval trachea	218 ± 18	4 of 4	0.89	None
Larval carcass	167 ± 14	4 of 4	0.68	Down
S2 cells (growing)	308 ± 9	4 of 4	1.25	Up
Whole fly	246 ± 14	4 of 4

Looking for CG3109-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720